RNA id: TCONS_00015611


Basic Information

Item Value
RNA id TCONS_00015611
length 3233
RNA type mRNA
GC content 0.40
exon number 17
gene id XLOC_007986
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33219370 ~ 33265068 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCTGAACTCACCTTTGAAATGAATATGCCAAGCTGCGAGGCTTTTCCTCCACGGATATTGAAGCCCAGCTGTGCACCAGGGGGCTTTTTTAACACTATAGTGCGAGTATGTTCCTGCACTCAGGGAACGTGGAGCCTCATTCATTGTTACCGCCTCATTAATATTCTCTCAGCGGGGAGTTGGAGTGCAGAGACCGTTCAAATGTGCTGAAGTTTGAGAGGCTGAATGGGATTTCGCTGTCACATCGTTTTTAGCAGTGAAAACAAATCCTCCCTCGAATCTACAATAAATCAAGACTCCCAAGCATGGCAAGAGCAAAGACATTTCAGGTGTGAAGAAGTGAGTCATTCCATATCCAAGCACCTGCACTAGAATACATGAGGAGTAACCTCCCTACATCCCGGACGTGACCCCCATTCATCTACGTACTTTCAGCTGGAATCATTTGATGTGGGAAAAACACAATGATCACTATGTTTCGAACCTGCCTGAGAGGGATCTACAGTTGCCACTGGAACCAGAGAAGTAATGAACAAAAAaGTGATCGCTGCTGGCTCTCATTTCTGTCTTTTGTGTCCATACTTGCCCTGAGCTGGATGTACATCTGTTTTATCGCCTTCAACGACCACTACGATGTAAACAATGAACTCTTCAAAGCAGTGAAAAAATGGGTGAACTGGTACATGATAGTGATGATCATTTCAGCTGTGCTTGCCATATACTGCTTGCTTTTACTGGTATTTGGATTGCTACATCTAGCCATCAAAGAACCATTGAATTTACACTGTCTGCATAAGGTGTTTCTGTTTTTGGGTCTCCTCGCTGTTACGTTGGAAACAGCTGGATTTTGTTTCAAATGGGAGAAGCAGTGGAAAGCCATCTACATGTCCTTTCAGGCTACTGCTCCTTTCCTGCAGCTGAGTGCTGTGGTGGCATTAACTGTGATCAGCTGCCTCGTCTTCCAGAGCTATCATAGAGCTAAAACAACTGCTTGTAAGATTTTCATAATGATGACCTTCCTGGTTGTGTCCGCTGCTGTGTTCCTGTGTCCTCTTGCAATCTGCTCTCCATGCATTACCAGTAATCTGCCCCCAAAACCTGCCCTCATTGGACATCGCGGTGCTCCCATGCTGGCTCCAGAGAACACTTTGATGTCCTTCAGGAAGAGTCTTGAGTTTGGTGTGGTGGCATTTGAAACAGATGTGCAACTTAGTAAGGACAAGAAGCCATTTTTAATGCATGACTGTGGTAAGAATTTTCTGCTGCGAACAACTGATGTAAAGGATAAGTTTCCAGGTCGAGATGGAAGCAACAACTTCACATTGCAAGAGTTAAAAACGTTAAATGCAGGCAAATGGTTTTCAAGGTCGGATCCATTTTGGACTCTGTCATCACTTTCAGAGGAAGAGAGGAGGGAAGCTGACAACCAGACAGTGCCATCTCTTTCTGAGCTCTTAGACCTGGTCAAAAAACATAATGTATCCCTCATATTTGACctgaaaaatgaaaacaactCAACGGTATTTCAAAGCAGTGACTCCTTCTACACCACTGAAACGATCAATAAATTAGGCATCTCACCTGACAAGATATGGTGGCTTCCCCCAGAATATAGACACGACGTGATGAAGATGGAACCAGGCTTCAAGCAGGTGTATAATAAGCAAAAGGAAATGCTTATGGACGGTGGAAACTTCATGAATATGAACTTCAGTTCACTTAGTGCGCTTGAAATAAGTGAGCTGCGGAAAAGCAATGTGTCTGTGAATCTCTGGGTTGTGAATGAGCGCTGGCTGTTTTCATTACTCTGGTGCTCTGGGGTCAGTTCAGTGACCACCAATGCCTGCCACCTCTTCAAAGACATGTCTAAGCCTGACTGGCATCTGGAACCTAATATGTACAAAGGAATATGGATCGCGACTGACATAGTATCATTGCTGTTAATGATTGGGCTGTTCCTTTGGCAAAGGAGAAGAAAGAGCTACATTTATCCTCCAAACACAAGTGAGAAAGGCATCCCGCTGCTTGCTCTCTGAGTGATGTCATCCTTTCCAGGAATGGGCATTTCCTTGTTTCAGTATTTGGATGATTGTGTGGTCAGAAAAACACACCACATTAAATGTGACATAATTTGCTTGTGCAGAGCTGGCACCAGCTAACAAAACAAGTCATTTCAGacatttgatttgtaaaatcagAATTGTTAGTATCACACATCAGTGCTTTTGTACATGTTTGATTTTATGAAACTTTGAGCCATTCAAAAAAAGCAACTACTTTAAAATTtagttctacttttttttttgctactttGTCTACAACTACTGTACACGTTCATTTAGCTGATCTGATCTGaatgtactttttgttttataCTGAGCCTATAAAATATTCATCACAACACTTCATGACACCTTAGAAAGACACTTAATATACATAAAGTGAACCATAATGTTTATAATCATGTATAGATGTTTTTATGATaattttaatgtactttttattGATACTTCAATGGAAAATATGGGCATTTATCAACTCACTTTGACAAGTTATTTGTGAAAAACTGGGAGAAATACCTCTCTTCTCTCATTCTGTCTCTTTCAAATTGCATTAGAGGCCAAGGTTGGTTGAATTTCTTTTTGTTGGTACAGGGGTCATTTTGGAGTCATAATTATTGCAATGTATTCTCTGTTTGTAATTCATATGAAATTAGTGTATttgtgattaaataataataatagtcatttttagatgtaaatatttttttattgaacaagAGAACATAAACTGATAAATACTTAAAGACTACcaaggtaaagtctagataggatacagctgcggatatgcATGTCAATATAGCattatttttatgacactgtatagcAATAATCCATATTTTTACagcactgtgatggttgggtttagggttagggtaggggtagacattaaaaatacaatttattgggtaattcaataaataacattaataatacttgatacaactactgtttttacgttactgtgatggttggggttatgGCTGGGGTGGGGgtggacattaataaaatacaattaatggaaaaTTTCCATTCAATTCGTTAACTTCTGGCTGCAACCATCTCTAGCAACCAACTACCAACCAGCCCTGGTCTCCTGTAATGGTAGCTATAcaatttattttgtactgttaAATGTGAATTTCTTGtataaaatgttgtttatgttta

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-62 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GDPD2 (glycerophosphodiester phosphodiesterase domain containing 2).

Ensembl:

ensembl_id ENSDART00000147038

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016060 lncRNA downstream 1682 33215366 ~ 33218418 (-) True XLOC_007985
TCONS_00015601 lncRNA downstream 170020 33048519 ~ 33050080 (-) True XLOC_007983
TCONS_00015597 lncRNA downstream 301266 32913680 ~ 32918834 (-) True XLOC_007979
TCONS_00015595 lncRNA downstream 336012 32882178 ~ 32884088 (-) True XLOC_007977
TCONS_00015586 lncRNA downstream 430512 32782904 ~ 32789588 (-) True XLOC_007973
TCONS_00016422 lncRNA upstream 33397 33298465 ~ 33307753 (-) False XLOC_007989
TCONS_00016423 lncRNA upstream 36952 33302020 ~ 33305342 (-) False XLOC_007989
TCONS_00015621 lncRNA upstream 36952 33302020 ~ 33308145 (-) True XLOC_007989
TCONS_00015623 lncRNA upstream 66710 33331778 ~ 33333951 (-) False XLOC_007990
TCONS_00015625 lncRNA upstream 67978 33333046 ~ 33334025 (-) False XLOC_007990
TCONS_00015608 mRNA downstream 1682 33195619 ~ 33218418 (-) False XLOC_007985
TCONS_00015605 mRNA downstream 42165 33071560 ~ 33177935 (-) False XLOC_007984
TCONS_00015607 mRNA downstream 114666 33088733 ~ 33105434 (-) True XLOC_007984
TCONS_00015606 mRNA downstream 136561 33073678 ~ 33083539 (-) False XLOC_007984
TCONS_00015604 mRNA downstream 138316 33071416 ~ 33081784 (-) False XLOC_007984
TCONS_00015613 mRNA upstream 5319 33270387 ~ 33277743 (-) False XLOC_007987
TCONS_00015614 mRNA upstream 6359 33271427 ~ 33278084 (-) True XLOC_007987
TCONS_00015615 mRNA upstream 15650 33280718 ~ 33297287 (-) False XLOC_007988
TCONS_00015616 mRNA upstream 15650 33280718 ~ 33297318 (-) False XLOC_007988
TCONS_00015617 mRNA upstream 17354 33282422 ~ 33297314 (-) True XLOC_007988
TCONS_00015549 other downstream 1357383 31855592 ~ 31862717 (-) False XLOC_007959
TCONS_00015558 other downstream 1359273 31860750 ~ 31860827 (-) True XLOC_007962
TCONS_00015557 other downstream 1359630 31860408 ~ 31860470 (-) True XLOC_007961
TCONS_00015555 other downstream 1360594 31859430 ~ 31859506 (-) True XLOC_007960
TCONS_00015548 other downstream 1362764 31855592 ~ 31857336 (-) False XLOC_007959
TCONS_00015626 other upstream 68380 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015628 other upstream 75070 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015641 other upstream 208736 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other upstream 210752 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015693 other upstream 2127679 35392747 ~ 35405723 (-) True XLOC_008028

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU8203 False 1338 lncRNA 0.42 11 CI01000000 11825074 ~ 11839934 (+)