RNA id: CI01000054_09495785_09497239.mRNA


Basic Information

Item Value
RNA id CI01000054_09495785_09497239.mRNA
length 1900
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000054_09495785_09497239
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9495450 ~ 9497682 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAATAATCTAAAGGCTGTATAGTGTTTTATAGTTTTCAAGGACATGATATAGCCTGTTCGTCCTTTTGTTGGCAGCTTTTAATGTCTTCTAACGCTCTGAGCACCTGCTATGAGTCTAATGGTTCTCTGCTGGACACTGGAGTGGCACCTTCTCCTCAAAACTCGCTTTATTGCCCGGTATATGAAAGTAGGCTTGTGGCCTCCAGCCGGCATGACCTGATCCCTGCTGCTGTCTATGGCAATTCCTGTTCAAAGAGTCACAATTATGATACCTACAGCACTTATGGTCCAGATTCAGCCTCATGCTATCCTCTGGTACGCATTTCATTTGTTCATTTCAATAACAACAGAGGTGAATATTACCTGCACTGTCATCATCAATGACCTCTTTTGTGATTATTTACATTTTTGCTTTATATTAGGGTAAACTCAGTGAGAAAGATGGAGTGGAAACAGGACATTCAAGAGTTACCCAAAGCTCTGCATATTACCATTACGACTACCCAATTGGACAGTACCACTATGACAGATATGGGTAAGAATGATCACCTCCTTTTTGTTATTCTAGAGAAATTTAGTTGCATCAATGGGCTTTTTGCTGAATTTTCAAGCTATTGTGCATCCAGCTTTAAAACAAATAGACTACTTGTCATGTTATTTAGATATGGATCTGTAGATGTGGGCACAAGAAGAAAAAATGCTACCAGAGAGACCACCAGCACACTGAAAGCATGGCTGCAGGAACATAAAAAGAACCCGTATCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACTAAGATGACCCTTACGCAGGTGTCCACCTGGTTTGCCAACGCACGCCGAAGACTCAAGAAGGAAAATAAGATGACGTGGTCACCGCGCAACAAGACCTCAGATGACAAAGAGTGTGACGACCAAGAAGATATGGACGAATCCCAGGGAGAGCTAATAAAAACCGAAAGAGAATTTAATGACAACCAAGGAAAGGATGATACAGATCAACTTCACAGTGATCTGGACGATTTCGATCTAGTGGAATCAGATGGCTCTGAGTGTGAATCGAAACCATCCTTTGTTATGCATGTTCGCTCCGAGACCAGTGAATTTCCAGATAACCGCTTTAAAGAATCCATTACCGAGCTCCCCAGTGGTGTCCATGAATTTAGTGAAGACCAACTGCTAAGACCAACTGCTGAAGACAACCAAACGGCAAAGTTCTACCTTCAACAAGGCCAAAAGACCATTGAGACCAAGCCAAAAATCTGGTCTCTTGCACAGACTGCTACGTCATTAAACCAAGCCGATTACTCATCATGCATGCATAAAGGAACGTTGTGCTCTTCTTCAAACTGTGACTCAGACATAAAAAGGAAACAAGAGTCTCCAGTGGCCACTCTGAGAAACTGGGTTGACGGTGTGTTTCATGATCCTTTATTCAGGCACACCAACTTCAACCAAACTTTCAGCAACTCCACAGAGTTATGGACTGAAGCCATTTCCTCACAGAATACCTACCATGAACACTCAGAACCTATTACTTCCTCTCAGCAGCTGTGACGCTTTTTTTATTTTTATTTATTTTTTTTTATACTTTTTTAATTTTTTTTTGTCGCACCATCACAAAATCAACACGCTATGCTTTGAATCTAATTGTGCTAATGCCTTATTTATTAGTTTCATTCTGTGAGCTGTTGTCATATAAGACCTCCTGAAAGTCTGATGAACTTTATATATTAGGACTTACCAACACAGCAATGTAGATTTAGGAAGACTGGCACCTTTTCACTTAAAAAAAATCTGATTCAATGATCACTGCTGTATAATAGCACAGTACACAATTTCCCCCAATCTGAAGTCTCAGTTGTTTTTAAATGACATTGCTCAGAAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266891 lncRNA downstream 53599 9437469 ~ 9441851 (-) True G235308
TU266878 lncRNA downstream 94884 9400361 ~ 9400566 (-) True G235298
TU266822 lncRNA downstream 178652 9316532 ~ 9316798 (-) True G235250
TU266816 lncRNA downstream 192746 9302438 ~ 9302704 (-) True G235244
TU266811 lncRNA downstream 202058 9292830 ~ 9293392 (-) True G235239
TU266934 lncRNA upstream 29166 9526848 ~ 9527267 (-) True G235350
TU266952 lncRNA upstream 59082 9556764 ~ 9559903 (-) True G235368
TU267183 lncRNA upstream 78912 9576594 ~ 9576876 (-) True G235575
TU267193 lncRNA upstream 84740 9582422 ~ 9664231 (-) True G235582
TU267203 lncRNA upstream 90377 9588059 ~ 9657253 (-) True G235591
CI01000054_09488559_09488870.mRNA mRNA downstream 6580 9488276 ~ 9488870 (-) True CI01000054_09488559_09488870
CI01000054_09483912_09484282.mRNA mRNA downstream 11168 9483812 ~ 9484282 (-) False CI01000054_09483912_09484282
CI01000054_09453616_09482480.mRNA mRNA downstream 12727 9452109 ~ 9482723 (-) True CI01000054_09453616_09482480
CI01000054_09218869_09223868.mRNA mRNA downstream 271331 9218632 ~ 9224119 (-) False CI01000054_09218869_09223868
CI01000054_09077309_09080163.mRNA mRNA downstream 414638 9076831 ~ 9080812 (-) True CI01000054_09077309_09080163
CI01000054_09531778_09544007.mRNA mRNA upstream 33828 9531510 ~ 9544510 (-) True CI01000054_09531778_09544007
CI01000054_09650064_09651286.mRNA mRNA upstream 152125 9649807 ~ 9651286 (-) True CI01000054_09650064_09651286
CI01000054_09686420_09705911.mRNA mRNA upstream 188365 9686047 ~ 9705911 (-) True CI01000054_09686420_09705911
CI01000054_09812111_09813425.mRNA mRNA upstream 314176 9811858 ~ 9813501 (-) True CI01000054_09812111_09813425
CI01000054_09831831_09832148.mRNA mRNA upstream 334076 9831758 ~ 9832148 (-) True CI01000054_09831831_09832148
TU266869 other downstream 10063 9485215 ~ 9485387 (-) True G235290
TU266868 other downstream 10132 9485215 ~ 9485318 (-) False G235290
TU267307 other upstream 365639 9863321 ~ 9867058 (-) False CI01000054_09864693_09866871
TU267309 other upstream 365639 9863321 ~ 9867212 (-) False CI01000054_09864693_09866871
TU267308 other upstream 365716 9863398 ~ 9867058 (-) True CI01000054_09864693_09866871
TU268158 other upstream 1306189 10803871 ~ 10816186 (-) True G236458
TU268159 other upstream 1306189 10803871 ~ 10815565 (-) False G236458

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028111 True 1818 mRNA 0.42 5 NC_007130.7 28256076 ~ 28261976 (+)