Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016781 |
| length | 756 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_008376 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 15232855 ~ 15237211 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042462 | eye photoreceptor cell development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0016592 | mediator complex | cellular_component |
| id | description |
|---|---|
| ko03021 | Transcription machinery |
| id | description |
|---|---|
| ZDB-GENE-021217-1 | Predicted to enable transcription coregulator activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED29 (mediator complex subunit 29). |
| ensembl_id | ENSDART00000033904 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00016777 | lncRNA | upstream | 374910 | 14856196 ~ 14857945 (+) | False | XLOC_008373 |
| TCONS_00016776 | lncRNA | upstream | 377089 | 14854889 ~ 14855766 (+) | False | XLOC_008373 |
| TCONS_00018910 | lncRNA | upstream | 982926 | 14249389 ~ 14249929 (+) | True | XLOC_008368 |
| TCONS_00016763 | lncRNA | upstream | 1090863 | 14141055 ~ 14141992 (+) | False | XLOC_008365 |
| TCONS_00016760 | lncRNA | upstream | 1179389 | 14045121 ~ 14053466 (+) | True | XLOC_008363 |
| TCONS_00018912 | lncRNA | downstream | 110431 | 15347642 ~ 15351457 (+) | False | XLOC_008379 |
| TCONS_00018911 | lncRNA | downstream | 110431 | 15347642 ~ 15351457 (+) | True | XLOC_008379 |
| TCONS_00016790 | lncRNA | downstream | 153690 | 15390901 ~ 15394658 (+) | False | XLOC_008381 |
| TCONS_00018764 | lncRNA | downstream | 213592 | 15450803 ~ 15452516 (+) | True | XLOC_008384 |
| TCONS_00016799 | lncRNA | downstream | 392295 | 15629506 ~ 15665686 (+) | True | XLOC_008388 |
| TCONS_00016780 | mRNA | upstream | 13899 | 15173611 ~ 15218956 (+) | True | XLOC_008375 |
| TCONS_00016779 | mRNA | upstream | 268614 | 14861335 ~ 14964241 (+) | True | XLOC_008374 |
| TCONS_00016775 | mRNA | upstream | 374666 | 14854666 ~ 14858189 (+) | False | XLOC_008373 |
| TCONS_00016778 | mRNA | upstream | 375391 | 14856307 ~ 14857464 (+) | True | XLOC_008373 |
| TCONS_00016774 | mRNA | upstream | 379276 | 14850820 ~ 14853579 (+) | True | XLOC_008372 |
| TCONS_00016783 | mRNA | downstream | 21547 | 15258758 ~ 15301427 (+) | False | XLOC_008377 |
| TCONS_00016785 | mRNA | downstream | 28814 | 15266025 ~ 15311768 (+) | False | XLOC_008377 |
| TCONS_00016784 | mRNA | downstream | 28814 | 15266025 ~ 15311768 (+) | True | XLOC_008377 |
| TCONS_00016786 | mRNA | downstream | 76978 | 15314189 ~ 15331501 (+) | False | XLOC_008378 |
| TCONS_00016787 | mRNA | downstream | 79115 | 15316326 ~ 15328206 (+) | True | XLOC_008378 |
| TCONS_00016758 | other | upstream | 1275005 | 13957722 ~ 13957850 (+) | True | XLOC_008361 |
| TCONS_00016757 | other | upstream | 1707867 | 13524874 ~ 13524988 (+) | True | XLOC_008360 |
| TCONS_00016731 | other | upstream | 3667346 | 11565391 ~ 11565509 (+) | True | XLOC_008343 |
| TCONS_00016719 | other | upstream | 5336869 | 9895858 ~ 9895986 (+) | True | XLOC_008335 |
| TCONS_00016712 | other | upstream | 5921377 | 9303809 ~ 9311478 (+) | True | XLOC_008326 |
| TCONS_00016791 | other | downstream | 157031 | 15394242 ~ 15401640 (+) | True | XLOC_008381 |
| TCONS_00016809 | other | downstream | 1281756 | 16518967 ~ 16519083 (+) | True | XLOC_008398 |
| TCONS_00016813 | other | downstream | 1592551 | 16829762 ~ 16829876 (+) | True | XLOC_008400 |
| TCONS_00016824 | other | downstream | 1863266 | 17100477 ~ 17101668 (+) | False | XLOC_008406 |
| TCONS_00016835 | other | downstream | 2136578 | 17373789 ~ 17373915 (+) | True | XLOC_008411 |
