RNA id: TCONS_00016775


Basic Information

Item Value
RNA id TCONS_00016775
length 1478
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_008373
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 14854666 ~ 14858189 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCATGTGCTTACAGCTAAATAATGTTTACCACAGCCCTTTGTGCTGACGTAGTGTGTACACTTGCGTCAAACCCTATCTTTCCTTGAACTTAAACCAGTAAAATCAAGATTAGGGGTCCGAATAAACGGATCAATATAGCCTGCATGAAGGGGCAGAGTCCCATTAGCAAAGTATAAATACTGGTGGGTAGTGCTgtcagttttaaacattcaaaagcttcactcagaaaaaaaacaggcttaAGGAATACATATAATATTTCTTTATAGTTTGGATTAAGCTATTAAACAATATGCAGGCTGTTAAAAACTGCGGTTTGTGTGCTAGTGGGAGTTTTCTTAAAGGCCGGACCGACTTCCTGCTCGCCCGGAGAAATATGGCTGTGCTGCGGATGAGCGCCGCATGCGTTCAGCTTCTCAAGGATAAGACCAGCGTGCTGTGCAACAGCTCTGTTCATCAGCGACTTCTGCAGCGCCTGCCAAACGTTGCTCGATCCAATGCAGTCCCGTTCAGTGTCGGCACTGGGCTCTGCGCGATGCCTTTTACACAGCAGGTTGAAAATCTCTCGCATGAATCTCTGATTCGTCGAGCATCATGTCTGGTCACTGACAGCGCCAACACGTACCTCTCTCAGACCACTCTAGCCCTGGTGGACGCCCTCACACAGTACGCCAAGGCACTACATACACTCATCAGCCTTCAGAAGCGATACATCGCCTCAATAGGGAAACTGAGCCCTGTTGAAGAGGACAGCATTTGGCAGGTCATCATTGGCCAGCGGGTGGAGGTTAGTGATCAATTAGAAGAATGTAAACGCTTCGAGTCAAACTGGATGAACGCCATCAACATTTGCGAGTTGTCAGCAGAAGCAGCCTACAATTCAGGAGCCGAGCATGCATGCACAGCAACAAAGACTAATCTGCAAGTGGCTCAATCTAAAGTGGAAGAGATTAGGAAGATCTCAAAAGAAGCGGAGAAAAAACTGGCGGAAACAAAAGCTGAAGAAATCCAGAGAATGGCCGAGTACGCCTCCAGCATTGACATTCATGATCTGGAAGACGTTCCAGAGGCCTACCTTCGTGAAGACTagaaaaacaaaatgcacagaCTTTCTTTAGTTTGCTATTTCTGTAGCGAGCAACGAATCAACAATAAGTTTGAATGAATCCAGATTGCACCTTGACTTGAATTAACAATCAGTATAGATTATGAAAATGAACGAGTGTTCACAACATCAAAAAACAAGTAATCTATTTGAAATAACTTGTATTCAGTGATTTAATGCAGCatgtaagttgctttggaaaTAATATtgatgtatatttgtatatatgtatatatattttttcatgtcCATTAAATATCACCGGCTGTTGTGATATTGCAGTGTACTTCCACAAAAATGTAATCAATcttgttttatatttgtaaaagATCGACTTATTTATTATGCTAATAAATGCAATGTTTATTAA

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0008631 intrinsic apoptotic signaling pathway in response to oxidative stress biological_process
GO:0008635 activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c biological_process
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1303 Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c; intrinsic apoptotic signaling pathway in response to oxidative stress; and neuron apoptotic process. Predicted to act upstream of or within activation of cysteine-type endopeptidase activity involved in apoptotic process and apoptotic process. Predicted to be active in mitochondrion. Is expressed in several structures, including cardiovascular system; digestive system; lens; pectoral fin; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 64. Orthologous to human DIABLO (diablo IAP-binding mitochondrial protein).

Ensembl:

ensembl_id ENSDART00000163066

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018910 lncRNA upstream 604737 14249389 ~ 14249929 (+) True XLOC_008368
TCONS_00016763 lncRNA upstream 712674 14141055 ~ 14141992 (+) False XLOC_008365
TCONS_00016760 lncRNA upstream 801200 14045121 ~ 14053466 (+) True XLOC_008363
TCONS_00016756 lncRNA upstream 1345298 13421514 ~ 13509368 (+) False XLOC_008359
TCONS_00018912 lncRNA downstream 489453 15347642 ~ 15351457 (+) False XLOC_008379
TCONS_00018911 lncRNA downstream 489453 15347642 ~ 15351457 (+) True XLOC_008379
TCONS_00016790 lncRNA downstream 532712 15390901 ~ 15394658 (+) False XLOC_008381
TCONS_00018764 lncRNA downstream 592614 15450803 ~ 15452516 (+) True XLOC_008384
TCONS_00016799 lncRNA downstream 771317 15629506 ~ 15665686 (+) True XLOC_008388
TCONS_00016774 mRNA upstream 1087 14850820 ~ 14853579 (+) True XLOC_008372
TCONS_00016773 mRNA upstream 2773 14826996 ~ 14851893 (+) False XLOC_008372
TCONS_00016772 mRNA upstream 25748 14826966 ~ 14828918 (+) False XLOC_008372
TCONS_00016771 mRNA upstream 187571 14642641 ~ 14667095 (+) True XLOC_008371
TCONS_00016770 mRNA upstream 254370 14592624 ~ 14600296 (+) True XLOC_008370
TCONS_00016779 mRNA downstream 3146 14861335 ~ 14964241 (+) True XLOC_008374
TCONS_00016780 mRNA downstream 315422 15173611 ~ 15218956 (+) True XLOC_008375
TCONS_00016781 mRNA downstream 374666 15232855 ~ 15237211 (+) False XLOC_008376
TCONS_00016782 mRNA downstream 374725 15232914 ~ 15237135 (+) True XLOC_008376
TCONS_00016783 mRNA downstream 400569 15258758 ~ 15301427 (+) False XLOC_008377
TCONS_00016758 other upstream 896816 13957722 ~ 13957850 (+) True XLOC_008361
TCONS_00016757 other upstream 1329678 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016731 other upstream 3289157 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016719 other upstream 4958680 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016712 other upstream 5543188 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016791 other downstream 536053 15394242 ~ 15401640 (+) True XLOC_008381
TCONS_00016809 other downstream 1660778 16518967 ~ 16519083 (+) True XLOC_008398
TCONS_00016813 other downstream 1971573 16829762 ~ 16829876 (+) True XLOC_008400
TCONS_00016824 other downstream 2242288 17100477 ~ 17101668 (+) False XLOC_008406
TCONS_00016835 other downstream 2515600 17373789 ~ 17373915 (+) True XLOC_008411

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_01465090_01466925.mRNA True 1347 mRNA 0.41 6 CI01000154 1464632 ~ 1467106 (-)