RNA id: TU282533



Basic Information


Item Value
RNA id TU282533
length 3641
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G248943
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1605938 ~ 1609817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAAATGTATTCATTGACTGATATTGTTTCTGGCCTGCTCTGTACCAGTGTTCCTCATAATTTTCATGCTACAGCAGAGATTCTCAGTTAATATCATTATGGAGAACATGAAGTAGCCCATGCATCTCACTGCATGACTCACTCCTGTTTCCATTTTAAAGCTCTTCCTGTCTGGTGCACTCTGAGTATTTTATCATGCATCAGTAGGTAAATATCCAACAAAATCATTGAATGTGAGACATTGTCCATGTTGTATTTGCCACACCTTTACAAGTGCTGTCTCAGACGTCCTTTTATATTTTGTTTGATCTATAGTTTCGCTCACCTCTGTCTTTCCAACAATGACCTCTGTGACATATGATGGTGTTTTTGATGTACAACATCAAAGCGTTTCCAGTGCATTGTTTGCATCCTTATTCTTCTTATTTCAAAGCATTATATGCACTGTAGGAACTATCTATAACTGTAACAGTCCTCCAGTGGCTTTTTACTTCTCTCTGTGACTTTTAGCAGGGCGCACATGGTACCCTACACCCGCAGGGAGCCTGGCTCTGTGAAGCCAGCAGCCCTGCACCTGCACAGGCTTCTGAAGCAATGGGTCATTCGTATGCATCAGGGTCAGAGTTTTCCCAAAGGAACTGCTAATAGATTAAGCACATGAATTAAGCATGGGAAATACAGAAAATATTGTCCAGGACAATTAGTGAGGACAGTAATGAGACTAATGATGGAGTGTGTGTGTGTGTATATATATATATATATATATATATATTTGTATTATTACATTGCATTGTCTTTTGCCCTGTAGAAGTAATAAATGTAGTTGTTAGGATTGCGGCCCTTCAGATGGAACATATGTTGACATCGGGATTGATGCAGTTGACCTGTTTTTTTAAATTAGTGAAATGTGATTTATTTTTTTCCAAATTAGTGGTTTGAATTATTTTAAATAAAGTAGTTCGACCAATGCGGCAAAGTCTCCATTCATTACAAATATCGAAGATGGACAATGAACCATAGCCACATTCTTAAATGGTAAATCCTTAAAGAGTCAAAAGTACATGATGCAATCAAACCCTTTATCAACATTAAATAGAGGCTGAGTTAAGTATAGTTCAGATGAACAGATTTGTTGAAAAGAAAATTTGCGAAGTATAATGAATACAAAAATAAAGAAGCCTTCCAATGATTGTCATTGTGAATCATTTAAAATCTTTTCAGTATAGAGTTGGATGCTGCTTTCTTTAACAAAACACAGACATCAGAGAGGCTTTCTAATCGCATGTGTTGACACAGGTTTTACATTGTACATAATAAATATGATGTTGAAAAGGGCTACAGTATACCTTTCATGTGGCTTCTTGTTTGATTTACAGTATTGTTTATGGCTGAAAGGAGGAAATCTTTTAACAGAAGACTTCTTCTCTTTAGTGCAGAATTGAACTCTTTGGGGATTTGTTTTGTTAAAAGTCATTGAATGACAGATGTTTGAGGTCCCGAAGACAAAGAATGCTGGAGATTGGATGATGAACATTAGCTAAAAAAAAGCTAACCATTAACTAGACCGTGAGAGCAGTAGTAGGTATTTGTGAACCTTTGTTGAAGAAGCACTTCCAATGAAGTAAAGCTGTACTGTACTTGATTGGCTGGTAATTAATACAATAGGTTAGTTAAGTTGACAATAAAGAACCTGTGAAAAATGAACTGTTAATGGTTGTCAGGTGCCTCTACATGTGTTTCTGTTTGATATGTCATTTTCTTCCGGCCAGTATGTTCTTAAATATTTTTAAAAAGAATATAGAAATGCATTTAAGTATTTTGCTGTCATCACCAAAACCTCAGATCACAACTTTTAATGTAATAATTTCAGCAGGATTGCTGTCGTTATGAGTGAAAAATAAGTCCATATTTGAATTGAATTGTGTATTTGATTAAAACCTATAATGCCCCTTTTACAAGATATAATATAAGTCTCTGGTGTCCTCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATACTCCACAGATCATTTGTCATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACGCTGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCACTTTCCAAAAGAGGGCGGAGCTTTAACAGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGTTAGTAACAGTGTTCAGCCCTTACATTGTTCAAACCGGAGTCGGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATTCAACTGGACATTTCGGAAAGGTTAGTGGATACATTTATGTAGTTGATTCAACTCATCGACTAGCATGTGCCATCATGTTAATCTTCAATTCAGCGTTGAATTGACCCTGGTTTGTGAAGCAGTCCGGCGTAAAATGACAGCATGGCAACAACACTCTCCTACAACAACTCTTCCTCTTCTCTAAAGCAGCTCAACATGGCCTCGCCCCATTTGTTGTGTGTTCTCGGGGGCAGGGTTTATGTAAATTTTAGTGTTAGTGACATCACTAACCTGGGAAGAAGCTCGTTGTAGTCCCTACCAGCTGTTTGTTGTAGTTCTTAAACAGCGAATTCTTTAAAAGAAAATATCTCCCTTTGCATTGAACTTTGAGCGTCATAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACGCTAACTAAATTTAAAAGTGAAATCATAATCAACCACTCCTTTAAAAAAACGTTCCATGCCAAATTCAAAGCCATATGGCCAAATCATTCTTTACCAGATTACACTCAGTTAAGTTAGCCTAGAAATCAATAACCCTCTGATCAAATTAGCAATGGAGTCATCTGATATGACACATTTTCACATTTCAGCTTGTTTAAGAGTGGTTGGGTGAAGGGGAGGTCTTCATTAGATCTGTATATCCCTTGGGATCACAGACAGCCAGCAAGCAAGCCCTGGAATTTCCCCATCAAAACCTGCCCAGGTGGAAACACCTGTCGCCGTAAACAATGAAGAAAACATGACACATGCCTTGTCTTGTTCTCTAGTGTGAATGGAAGTATGGACAATAACAAGCATCTTTATAAATGGTGATGGGATCGGAGGTCAAGGTGTGAGGTTTTGGTATTACTTCCAGGTGCACTTGATGTTGTTAAGAATGGAAAACCACATTTAGCCTACTATAGAACTGCCTGGCAGCTTCAAATTGGCCTCTGTGTTCTTATTAGCGTGGTTTCTGATGTGTCAAGACTGATGTTAAGTCACTTGGGACATATAGCTCAGGGATATTACAGATGATTCTTCATTTATGTCAACGGTCTTGTACTGCCACTCTGCAATTACTGTGAGATTGAGCTTTCTGTATCTGTGTCATGCAGTCAGTCACAAGGATGATGTGAAAAAATGAAGACTCATTCCTGTCAGGAAACCTGAGCCTTGGGGCTTGAGGGGAGGGAGGTTTCGAGAGAGAGAAGAGAGGACTGTTTGTGTCCTCATATGTCGTTTGGGGTGGTTGGACGCACAGTGGATGAGGTGTCATTCTGTGAAACCATTGCTTTTACAGTTTGATAAGGGGATTTCTGGTGGATTTTTAAACTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU282496 lncRNA downstream 107721 1446661 ~ 1498217 (-) True G248916
TU282494 lncRNA downstream 171009 1431615 ~ 1434929 (-) False G248914
TU282493 lncRNA downstream 171009 1433570 ~ 1434929 (-) True G248914
TU282475 lncRNA downstream 204196 1401538 ~ 1401742 (-) True G248901
TU282473 lncRNA downstream 205073 1400653 ~ 1400865 (-) True G248899
TU282545 lncRNA upstream 7634 1617451 ~ 1617654 (-) True G248955
TU282548 lncRNA upstream 11196 1621013 ~ 1622953 (-) True G248958
TU282615 lncRNA upstream 146144 1755961 ~ 1768102 (-) True G249014
TU282625 lncRNA upstream 180917 1790734 ~ 1791212 (-) True G249024
TU282678 lncRNA upstream 214197 1824014 ~ 1824332 (-) True G249077
CI01000058_01528111_01564969.mRNA mRNA downstream 40969 1527499 ~ 1564969 (-) True CI01000058_01528111_01564969
CI01000058_01510773_01517931.mRNA mRNA downstream 86756 1510350 ~ 1519182 (-) True CI01000058_01510773_01517931
CI01000058_01462558_01465691.mRNA mRNA downstream 139809 1462523 ~ 1466129 (-) True CI01000058_01462558_01465691
CI01000058_01453383_01456154.mRNA mRNA downstream 149654 1453084 ~ 1456284 (-) True CI01000058_01453383_01456154
CI01000058_01418324_01423047.mRNA mRNA downstream 182411 1417497 ~ 1423527 (-) True CI01000058_01418324_01423047
CI01000058_01680894_01693752.mRNA mRNA upstream 70977 1680794 ~ 1694205 (-) True CI01000058_01680894_01693752
CI01000058_01694694_01723697.mRNA mRNA upstream 84862 1694679 ~ 1724208 (-) True CI01000058_01694694_01723697
CI01000058_01807681_01819809.mRNA mRNA upstream 197854 1807671 ~ 1819809 (-) True CI01000058_01807681_01819809
CI01000058_02049299_02051461.mRNA mRNA upstream 439472 2049289 ~ 2051809 (-) True CI01000058_02049299_02051461
CI01000058_02100559_02106600.mRNA mRNA upstream 490201 2100018 ~ 2106652 (-) True CI01000058_02100559_02106600
TU281026 other downstream 950989 646443 ~ 654949 (-) True G247592
TU282944 other upstream 1248666 2858483 ~ 2861193 (-) True CI01000058_02859435_02860658
TU283989 other upstream 2078826 3688643 ~ 3696711 (-) True G250230

Expression Profile