RNA id: CI01000069_00962392_00964350.mRNA


Basic Information

Item Value
RNA id CI01000069_00962392_00964350.mRNA
length 3103
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000069_00962392_00964350
representative False

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 959810 ~ 964499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAGACCACGCCTCTTCTGAACCGCCAATAGAGAGAGTGTGTACACCATCATTGGACAACCTATTAGAACACTGACAGAGCAAGAGGGAAAAGAAAACAAACAACACATACCAAATACAAGAACGCAGGTCGTAACAATAAGCATGCTTTTATTTTTTTTATTTTTTTATTTAAGGGTAAATAATAAGTTTTTAAAGGAGAATTCCTTTAGTTTTGCATTTTAAAAATATGAAATATATTCTCTCCAGTAAGAGCAACACTTTCTGTTTTTTTGCCACCTAGCTAAATAAATAAATAGTACTATCAAGCTTTCCACAAAGTATTACATGTGTTTCAACCTGAACAAATTTTCTTTTAGACATTATTCAATAATGTATTTGTTCATTTATTATTTATTTTAATTGATCTGAAATATTTTAACCTGGTGTGAAATGAATTTAGTGTAAATATGTGAGATGACCCAGATCCTGGTGCTCCAAATTTAGTGGCAAAGCAATCACAGATTCAGATCCAGCTTGGATAATTCTCCCAAGATGTTGTGGCTGTTGGTTGCACAAAGAATGCATAATTAAAATCTGAAACAATCCATGAACGCATATCTGTGAGTGCAATTTGTCCATTGCTAGGCAACTGTACCACTTCTTAACTGTAGGGGGAACTGAACCTATATGTTTGGTTTCAGATGTGCTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTGATTAATTACTCACCCTCATGCCGTTCCACACCTGTAAGACCTTCGTTAATCTTCGGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTCCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTAGTTCAATATTAATATTATAAAGCGACGAGAATATTTTTGAACTGATTTAAATATGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAATGTCATTGCTCCCTATGCAGGTCTCACGGAGCCATCGGATTTAAACAAAAATATCTCAATTTGCGTTCCGAAGATTAACGAAGGTCTTACGGGTGTGGAACGGCATGAGGGTGAGTAATAAATGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAATTGGTTTTTGTTAAGTTAAATGTTATAAATCATACTTCAGATGTTTATATGTTGTTGTTGTTTTTCATGCTTTGTACACTTTGTATTACTTTATACAGACAAATACAGATCTTGTGCACAGAAAAAAATTAATAATTGAAAATTAAGAAATGTAAATTCTGATTCCAAATCATATTTCTGCAATCTGTCTTGCAAATATTTAAGATTGCCTGTTCACTCATGTTTTTGCATATGAGTGTTTGTTTGGAGATTTCTGTTTGGGGTCTGTGAAATCCATTTAGTCATGTTTTACTTTCCCTGTTGTCCGCTGCACGGAAATCTTATTCAGAACATCCAGGGATACGAGGACGTACGCCTACACAAACTGTGTTAGATTTAGATTTAGATTTACTGTAAAGGAGGTAAAGCAACCATGACCAGATGGACCAGCAGAAGTGTTTTGTTCCTGGTCATAATCTTCCTGCTGATGCCTCTAACCTGGACACGGAGAGGAGCACCAGCTGAGACATATAAAACCTTAAACCAAAGACTGAAAAGGCTGAATCAGCAGTTCATGAGATTCAAACAGATGACCTTCACTCATCTTCAGAGCATTGCTGAAAACTACAACATTTCAAACAGCATTGACTCTCGATTTCAAGTTTTGAGTCTGCAATTTGAGAGGATCTTCAGAGAGCTCCAGGGATTTAAAAAAACAACAGAGCGCAGTCTGAAGTCCCTCAAATCCTGGACTAAGAGTCTACAGAAAAAGACTAAGAGGCTTGACTTGAGTCTGGCCAACATGACAAGAGCTTTGAGGGAGAACAACCATCTCAACCTCAGACAAATCCAAAAGCAGAGAACACTGCTTTCTGACCTGTCCCACAAGATCCAGAACCAGCAAAGTCACATCGGCTCTTTGGAGTCCTTGAGGAATCAGGTTCAACATGGGATGCAGGATCTTCGGGCCTCTCTCAAAAGGCATCAGACCCAGATAATGAAGTTGGAGAGTCAGATGCAAGGGTTGTTTAAGATCATTTCAGCTTCCAAGGCAGGAGTTTTAGATCCCCCCAATTCTAGGAAGCAACAAGGTGTGGTTCTGAGGCATGTCCAGCCTAAACCGAAGCCTGAAGAACAAAAAATGAGAGATAGATTGCCAACTTCTGGGCCCACCAAACAACCACAGACACATAAAATAAGACACAAACAACAGCAACCCTGGCAGAGCACTGTACAACCAACAGTTGAGGCTGAAGAGGAACTTTTTCAGCTTCCTCTTCGACACAAAATCCCACGTATTCAAGCCCCAAAGGAAGAAGCCAGAAAGAACAATGACAATATGCTTGTTCTCTATGGCCGAAATTCTGGTGTACTGGGCTTCATGGATTTTGTGATTGGAGATCCAGCGTATCGTGAATTATCTTTACAAAATATCCAGGATGGCCGCTGGCACCATTTATGCATCATCTGGTCTTCCATTGAAGGCAGGTTTTGGTATTATTCAGACAGTCGTCTCGTATCTACTGGATCCAAGTTCCAGAAGGGTTATGAGATCCCTCCTGGGGGCTCTGTGGTCCTGGGGCAAGAACAGGATTCGGTTGGAGGGGACTTTGATGAAGCTGAAGCATTTGTGGGCAGACTGGCTGGCTTTGCGTTTTGGACTAGGACCCTAAGCCCTGGGGAGGTGTCTGGGCTGGCCACTGGCAAAGGGGTGCCACGAGGAGTAGTGCTCACCCTGGATGATGTAGACCAGATGTTTGGCTCTGTTCAGCACATTACCTGTGAGTGTCTGGAACACTGCATGTAAAGGCATGACAGAATCAGCCAGAAAAACACCTCTGTATACACATTGTTTTTTTATTTCCATTTATTTTGGTAAAACAACACTGTTTATTTTTATTGATCAAATTTTACACATTTGGTCTTACTAACTTTTGACTATAAACTTTGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310674 lncRNA upstream 499 960081 ~ 960313 (+) True G273803
TU310631 lncRNA upstream 36406 922448 ~ 924406 (+) True G273761
TU310298 lncRNA upstream 199041 761569 ~ 761771 (+) True G273459
TU310295 lncRNA upstream 203570 757005 ~ 757242 (+) True G273456
TU310247 lncRNA upstream 455692 504865 ~ 505120 (+) True G273408
TU310640 lncRNA downstream 58671 1023170 ~ 1023898 (+) True G273770
TU310700 lncRNA downstream 120233 1084732 ~ 1084941 (+) True G273827
TU310727 lncRNA downstream 154877 1119376 ~ 1120080 (+) True G273850
TU310725 lncRNA downstream 183965 1148464 ~ 1178111 (+) True G273848
TU310832 lncRNA downstream 381878 1346377 ~ 1346723 (+) True G273955
CI01000069_00932460_00950854.mRNA mRNA upstream 9365 932310 ~ 951447 (+) True CI01000069_00932460_00950854
CI01000069_00925578_00927804.mRNA mRNA upstream 32993 925319 ~ 927819 (+) True CI01000069_00925578_00927804
CI01000069_00910238_00919183.mRNA mRNA upstream 41109 909886 ~ 919703 (+) True CI01000069_00910238_00919183
CI01000069_00743257_00745220.mRNA mRNA upstream 214741 743182 ~ 746071 (+) True CI01000069_00743257_00745220
CI01000069_00596413_00741443.mRNA mRNA upstream 219369 596413 ~ 741443 (+) True CI01000069_00596413_00741443
CI01000069_00966300_00979227.mRNA mRNA downstream 1801 966300 ~ 980520 (+) True CI01000069_00966300_00979227
CI01000069_00994148_01017851.mRNA mRNA downstream 28953 993452 ~ 1018734 (+) True CI01000069_00994148_01017851
CI01000069_01020120_01022182.mRNA mRNA downstream 55621 1020120 ~ 1022291 (+) True CI01000069_01020120_01022182
CI01000069_01027083_01031960.mRNA mRNA downstream 62584 1027083 ~ 1032781 (+) True CI01000069_01027083_01031960
CI01000069_01047561_01050241.mRNA mRNA downstream 82996 1047495 ~ 1050340 (+) True CI01000069_01047561_01050241
TU310194 other upstream 481731 477727 ~ 479081 (+) True G273359
TU311015 other downstream 1068901 2112843 ~ 2172193 (+) True G274124
TU311181 other downstream 1708125 2672624 ~ 2681158 (+) True G274270
TU311230 other downstream 1928347 2892846 ~ 2892971 (+) True G274314
TU311499 other downstream 2648218 3636100 ~ 3638430 (+) True CI01000069_03636156_03639756
TU311564 other downstream 2835524 3800023 ~ 3803501 (+) True G274603

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050094 True 2369 mRNA 0.41 6 NC_007114.7 27642081 ~ 27663447 (+)