RNA id: CI01000071_04163270_04188267.mRNA


Basic Information

Item Value
RNA id CI01000071_04163270_04188267.mRNA
length 2960
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000071_04163270_04188267
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4163270 ~ 4190573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGGCTATTGAGAAACTACAGATGTTGATCGAAGCAGCTGAATATCTTGATCGAAGAGAAAGAGAAGCGGAGCACGGCTATGCCTCCATGTTACCCTTCACCAGCAACAAAGAGAGGGATGGCTTGAAACGAAAAATCAAAAGCAAGAAAAATTGCAGCAGCAGGTCTACACACAACGAGATGGAGAAGAACAGAAAAATCCAGCCAAAGAAGGAAAACGAGGCTCCACTCGTCTATGCTTTTGTTTCACACTGGCTCAAAATGGAGTCCAGGGCTGATATTCATAAAGCAACTCGAAAGTTGGAAGATAGCGAGCGGAAGGCCCAGCACACTATAGACCAGCTGCAAAGAGAACAAAGGCACCTGCGCAGACGCCTGGAGCAGCTGGGTGTGGAGCGCACACGTATGGACAGCATGGGCTCCACCATCTCTTCAGACAAATCTGACTCCGACCAAGAAGAGGTGGATGTTGACGTGGAAGGAACAGACTATTTGCTGGGAGACCTGGAGTGGAGCACCAGCAGCGTAAGCGACTCAGACGAGCGGGGAAGCTTGCGCAGTAGCTGCAGCGATGAAGGCTATTCCAGTGCCAGTCTCCGTCGCCTCGCCAACCCTCAGGAGAAGAGCCCAGCGCTGGGCTGCAGTCTATAAGAGCACAGATCACCCCCGGTTCCTCAGCCACTCTTCTCCCACCACTTCAACCTGAACCTCCAATCACCTTCAGCCAGGTCCTCCTCTAATACTTGAACGGTGTTGTCTCCTTTGTGACCGAAACAACGAAAAGGTCTTTCCCTTGCTCTGACAAATCCAGTCTATGTGTGCGAGTGCGAGTCAAGAGGAGGAAGCGCGGAGAAAGTATTGGAATTTGGATGTGCCACCCACCATCCAGACCTCATATATGCAGCACTAACTGGGAGAAAAGGCCGACCCTTCTTCACCAAACCACACCAATCCGATCTTCCCACCCATTTGCCTTTGCTCCCACCCCACCATCCTGGAGAGAGGCACACGATTTGGGACATTCTCATTCCCGAAAGACCCTCAAAAGACCCTTAAAGACCTCATAGCCAGATGAAGAATGTGTACCATACCACACCCACTGCCTAGTCACTGTCGCACTCTGGGACAATCGAACCCAGGCTGTCTTACGCAGCCCTTTATGTTCCTTCAATCAAAAACTGAACCGTCCAGACACAGGGCTGGGTCATCTGACCAGTTAGCTAACCAACCAGAGCATGGTATTTTGCACTTAGATGACAACGTCCGAAGGAGTGGCCTTTTTACACTCGTCTGAAGCCAGCTTTGCCTTGTCCCGCGTAATAACCAAGGACCGGATTTGGGAAAGCTGCGAGATCAGAGCAAAAGGGTTACTTCTACCGTCCTGGCAAGGATTGCTTCGTGTCAAAAGATGTGCTGTCATGTCGTTTTGTTTTCTAAAACGTCTCTCCGAAGGGACTGCAGCTACTTTAGTGATGTATCAGACGCAGTGTGTTAGCTAGTCTTAAACAAAAAATATCTACCTGCACTGTCTAATACCTGACGCTCCCGTCACCGCACGGGCAGAGATCACTGACGTGTTGTTGTTTCCTCTCTTTGTTTTACCCAGCAAGCACTCATAATACTCATGCTGTGTGAAATCATCAGGGCGGTAGCAATACACCCCTCAACTGGACTTACCGACGGATCCCTAAACAAGAAAATCTCTATTTGTTGTAGTTTTTTAAGCATATGCTATACTTTAAATGCCCCCCCTGACCTGCCATCTTGAATTTTAGTACTACAACCAAGGGGCGAAACGACTGAAGCGTTTGCAGCATGAGATTCTTCGAATGGTTTGTGGGTTGGGTTTATGAAATGGGGGTGGGAAGAGGGTTGACGTCTGGATCTCAGGTATCTCTTCCTCTCTCTCTAAGGACAGTGGCGTTTTTTTTGTGTGATGCATCTTCTTCATGTTTGTCCGTTTTCTTTTCTCTCGACTGTTTAGCCCTAGAAGTACAAGGGCAATTCTAGAAGCACATTCCATGGTATAGCAGAGCTTTGCGTTATTGCATGGACTGCAGACACTGATACAAAGGTCTGAGGCTTCAGATTACCTACTGTAGGAGCGACTGAGCCCTCTGCTCTTGCGCCATCAGGCTCATTGTAAGAGTGTGAGTGTGTGTGTTCGTCGGTGACTGCAGCACTGCATTGCAGTTTCACTCCTGCTACCCAGCGATTTACCATTTCAGCTAAATGTAGTCATGATGTGTGTATATAGTTCACAGAAAAAGAGAGATATATACCCTATATGTACGTATATCGATAAAGTATTTATATTTGATCTACATTATATGTTAAAACATAGACTATAATTATATATATATATATATGAGAATATATTTAAGTAGTGTTTGCCTTAGTTGCTTCGGTTCTCTTTATCGTTAGTTTCAATGTGTAGTTGATTTGCACTATATTATAGAAACATATAAATATATACCTATTTTACACATCCTGAATTCTAACTCTGTGCTCGTAGAGCCAAAAAAACTTTATTTTTTCCTGCACAAAATGAAAATGTGTCGATTAAAAAAAAAAAAAAAAAAACATTAAAAAGTAATATAAACTGCATTAAAAAAATATGATTGGGCGTATTTGTTAGTTTGTTGGTGGCACTGCGATTGTGGAAAGTGGGTGATCAGTAAGTAGCCTGTTATTATCGTGCCTGATCGGACTAGGGAGAAGCGTTTTCCTATAACACTAGTGAGTCAAGTGGGTTCTGTAAGGAGCCTAGTGAAGGATCTGTATGTTTGAATGTACTGTTGCATCACAAAGTGACATCTTGAATTGTAGAATATATAATTTTTTAGACTGATGCACCAAAAATGGAATTTAAACGAATCGGATTGTTCATTCTTTACATATGGAATGCTGCTGTTTGGTAGTTTTAAAAATCTTAAATCCCCCCCAAAAAAACTAAA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09114 MXD, MAD; MAX dimerization protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320538 lncRNA upstream 31336 4121916 ~ 4131934 (+) True G282811
TU320584 lncRNA upstream 59227 4008957 ~ 4104043 (+) True G282857
TU320552 lncRNA upstream 76196 4086377 ~ 4087074 (+) True G282825
TU320523 lncRNA upstream 92897 4067529 ~ 4070373 (+) True G282798
TU320582 lncRNA upstream 157370 4005607 ~ 4005900 (+) True G282855
TU320628 lncRNA downstream 43861 4234434 ~ 4241083 (+) False G282894
TU320629 lncRNA downstream 43861 4234434 ~ 4241083 (+) True G282894
TU320633 lncRNA downstream 59556 4250129 ~ 4250341 (+) True G282898
TU320636 lncRNA downstream 61982 4252555 ~ 4252959 (+) True G282901
TU320638 lncRNA downstream 65764 4256337 ~ 4257047 (+) True G282903
CI01000071_04129094_04161220.mRNA mRNA upstream 1793 4129055 ~ 4161477 (+) True CI01000071_04129094_04161220
CI01000071_04113995_04118019.mRNA mRNA upstream 45032 4113847 ~ 4118238 (+) True CI01000071_04113995_04118019
CI01000071_04007497_04017876.mRNA mRNA upstream 145044 4007033 ~ 4018226 (+) True CI01000071_04007497_04017876
CI01000071_03942074_03954201.mRNA mRNA upstream 209030 3941975 ~ 3954240 (+) True CI01000071_03942074_03954201
CI01000071_03901048_03909621.mRNA mRNA upstream 252633 3901048 ~ 3910637 (+) True CI01000071_03901048_03909621
CI01000071_04206342_04211122.mRNA mRNA downstream 15638 4206211 ~ 4211133 (+) True CI01000071_04206342_04211122
CI01000071_04228627_04229463.mRNA mRNA downstream 38054 4228627 ~ 4229571 (+) True CI01000071_04228627_04229463
CI01000071_04443263_04450257.mRNA mRNA downstream 252613 4443186 ~ 4451260 (+) True CI01000071_04443263_04450257
CI01000071_04464134_04466967.mRNA mRNA downstream 273561 4464134 ~ 4467233 (+) True CI01000071_04464134_04466967
CI01000071_04500188_04515251.mRNA mRNA downstream 309615 4500188 ~ 4515251 (+) True CI01000071_04500188_04515251
TU319744 other upstream 1106739 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 1334666 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 2785600 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 3241174 905217 ~ 922096 (+) True G280443
TU318001 other upstream 3359953 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060075 True 1282 mRNA 0.48 6 NC_007116.7 13706959 ~ 13766651 (-)
mexican tetra (Astyanax mexicanus) TU401672 False 3781 lncRNA 0.39 3 NW_019172819.1 1939114 ~ 1946430 (+)