RNA id: CI01000071_04500188_04515251.mRNA


Basic Information

Item Value
RNA id CI01000071_04500188_04515251.mRNA
length 2410
RNA type mRNA
GC content 0.51
exon number 17
gene id CI01000071_04500188_04515251
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4500188 ~ 4515251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGTCCAGGCAGTTTGCTTCATAGATGATCTGTGGCACACGTTCCATGTCGATGTTCTCCCTGTTATTGGTGCAGAAGAATGTAGCTGTTCAACCCGAAAAGGCCTAAATGGAGCGTGCTCAGTCCATGAGTACACCGGAAGCTTTGTGGGCCAAAATGTGAGGTTCAAGATGACGTCCGTGTGTGGACACGTCATGAGTCTGGACTTTATCGGCAAGTGTCTTGTCTTCAGAAAGTATAACAACTGGGATAAAGTCGATCCAGCTGAGTTGTTCAGTAAAGCTCCGACCGAGAAGAAGGAAGCCAACCCCAAACTAAATATGGTCAAATTCCTTCAGGTTGAAGCAAAAGGTTGTGACTTTGTCGTCCTGTGGTTGGATTGTGACAAAGAAGGAGAAAACATTTGTTTTGAGGTGTTGGATGCCATTCAGCCTGTGATGAATAAGTCTTTTGGTAGTGAGCGTACGGTGTATCGGGCCAAGTTCAGCTCCATCACAGACACAGATATCTGTAACGCCATGAATCGACTCGGAGAACCTAACAAGAACGAGGCTCTGTCCGTAGATGCTCGTCAGGAACTGGACCTCAGGATCGGCTGTGCTTTCACACGTTTCCAAACCAAATACTTCCAGGGAAAATATGGGAATTTGGACTCCTCCTTGATCTCTTTTGGTCCCTGTCAGACTCCCACACTGGGGTTCTGTGTGGAACGTCATGACAAGATCCAGTCCTTCAAACCTGAAACATATTGGGTCGTACAAGCAAAGGTTTTTAAAGGGAAGGACAGCCCACTTTTCTTGGACTGGGACCGCGTTCGAGTTTTTGACCGAGATGTTGGTCAAATGTTTGTCAACATGGCAAAGACTGCTAAGGAGGCTAAAGTTGACTCTGTGACTAAGAAAGAGAAAGCCAAGCAGAGACCTCTGGCACTGAATACAGTGGAGATGTTAAGAGTGGCCAGTTCTGCTTTGGGAATGGGTCCCCAGCATACCATGCAGATAGCAGAGCGTCTCTACACACAGGGTTATATCAGCTATCCTCGCACAGAGACGACACATTACCCTGAAAACTTTGACCTGAAGGGCACCCTCAAACAACAGGCCAACAGCTCCTTCTGGGGTGAAACGGTAAAAGCTCTTCTCTCTGAGGGCATTAATAGGCCAAGGAAAGGAGCGGACGCAGGAGACCATCCGCCAATCACACCCATGAGAGCCGCCTCTGAGAGCGAGCTGGGCAGCGATGGCTGGCGTCTGTATGATTACATCACACGGCACTTCATAGCGACGGTCAGTCCCGACTGTAAATACCTGCAGACCACGATTTCCTTCAGCATTGCCACAGAGAGCTTCACATGCAGCGGGAAGACGCTCATCTCTGCTGGTTACACTGAAGTGATGCCCTGGCAGGGTATTCCGCTGGAAGAGGCCTTGCCGGTGTGTGAGAGAGGAGACACATTCACAGTGGATGAGATCAAACTACTGGAGAAACAGACCAATCCACCAGACTACCTCACTGAGGCCGAGCTCATCACACTCATGGAGAAACACGGCATTGGTACGGATGCCAGCATCCCCGTCCACATTAACAACATCTGCCAGAGGAACTATGTGACGGTTGAAAGTGGCCGCAAACTCAAACCCACCAACCTGGGGATTGTTCTGGTTCACGGTTACTATAAGATTGATGCAGATTTGGTTCTGCCCACAATCCGGAGTGCTGTGGAAAAGCAGCTCACTCTGATAGCTTTAGGAAAGGCAAACTTCCAGCAGGTCTTACAGCACACTCTGGACATCTTCAAGAGGAAGTTCCACTACTTTGTGGACTCCATTGCAGGCATGGATGAACTGATGGAGGTGTCCTTCTCTCCCATTGCCGCTACTGGGAAACCACTCTCTCGCTGCGGCAAATGCCGTCGCTTCATGAAGTACATCCAGGCTAAACCCAGTCGTCTGCACTGCTCTCACTGCGACGAGACCTACAGTTTACCTCAGAACGGAGCCATTAAGCTGTACAAAGAGCTCAAGTGTCCCCTGGATGAGTTTGAGCTGGTGCTCTGGACCTCAGGGTCTCGTGGCAAAAGCTACCCTGTGTGTCCATACTGCTTCAGCAACCCTCCCTTCAGAGACATGAAGAAAGGGATGGGCTGTAACGAGTGCACCCACCCTTCCTGTCAGCACTCCCTCAACTCTCTTGGGATCGGTCAGTGCGTTGAATGTGAGACGGGCGTCCTGGTCTTCGATCCCACCTCGGGCCCAAAGTGGCGCATGGCCTGCAACAAATGCAACGTGGTGGTGCATTTCTTCGAGCACGCCCATAAAGTGCAGGTGTCCCAGGACAGCTGTGATTCCTGCGAAGCCTCTCTGGTTGTAGTGGACTTCAACAAGACACGCTCGCCATTGCCCGATG

Function

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320745 lncRNA upstream 26596 4472909 ~ 4473592 (+) True G283008
TU320744 lncRNA upstream 27286 4472696 ~ 4472902 (+) True G283007
TU320743 lncRNA upstream 27762 4471619 ~ 4472426 (+) True G283006
TU320742 lncRNA upstream 28624 4471122 ~ 4471564 (+) True G283005
TU320740 lncRNA upstream 29746 4469605 ~ 4470442 (+) True G283003
TU320534 lncRNA downstream 14855 4530106 ~ 4531307 (+) True G282807
TU320544 lncRNA downstream 21852 4537103 ~ 4617741 (+) True G282817
TU320764 lncRNA downstream 112990 4628241 ~ 4628538 (+) True G283025
TU320765 lncRNA downstream 113349 4628600 ~ 4628893 (+) True G283026
TU320768 lncRNA downstream 115297 4630548 ~ 4630998 (+) True G283029
CI01000071_04464134_04466967.mRNA mRNA upstream 32955 4464134 ~ 4467233 (+) True CI01000071_04464134_04466967
CI01000071_04443263_04450257.mRNA mRNA upstream 48928 4443186 ~ 4451260 (+) True CI01000071_04443263_04450257
CI01000071_04228627_04229463.mRNA mRNA upstream 270617 4228627 ~ 4229571 (+) True CI01000071_04228627_04229463
CI01000071_04206342_04211122.mRNA mRNA upstream 289055 4206211 ~ 4211133 (+) True CI01000071_04206342_04211122
CI01000071_04163270_04188267.mRNA mRNA upstream 309615 4163270 ~ 4190573 (+) True CI01000071_04163270_04188267
CI01000071_04518557_04528364.mRNA mRNA downstream 3306 4518557 ~ 4528452 (+) True CI01000071_04518557_04528364
CI01000071_04534337_04569325.mRNA mRNA downstream 19086 4534337 ~ 4569325 (+) True CI01000071_04534337_04569325
CI01000071_04584728_04585430.mRNA mRNA downstream 69477 4584728 ~ 4585721 (+) True CI01000071_04584728_04585430
CI01000071_04589416_04602399.mRNA mRNA downstream 73073 4588324 ~ 4602495 (+) True CI01000071_04589416_04602399
CI01000071_04706607_04712020.mRNA mRNA downstream 191356 4706607 ~ 4712223 (+) True CI01000071_04706607_04712020
TU319744 other upstream 1443657 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 1671584 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3122518 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 3578092 905217 ~ 922096 (+) True G280443
TU318001 other upstream 3696871 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060065 True 4298 mRNA 0.44 17 NC_007116.7 13212960 ~ 13251907 (-)