RNA id: TU320742


Basic Information

Item Value
RNA id TU320742
length 443
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G283005
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4471122 ~ 4471564 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGATCAGAATAAAACTGGGAATTAATAAAATGCAATCTTAAATATTGTCAAGCAAATATAACATCTCTCATATACTGTATGTATATATCTATACATCTCATCTTACAATACCCTACAAGGTAAAATACTGTTCAATGCAGGTAAAAATTGTCATGGATAGTCTGGCATCTCTGAAAATACAATAAAATATTGTATGAATTGCTGCCATACACATTAAAAAATAAAATAAAATGACATTTAATTTCACAAGCAGGCAATATACATTTTGTTCTGCAGTTAACAGCATTGAAATGAAAAAAATAAATAAATAAATAAAAAACAATTTATTTATTTAATGCATTATTTTCTTTTATTGAAGACTGGTGGTTATGTACAAAGCAATCATAAAGAAAGGTTCGGACAGATTAGTGGCTCAGCTCATTAAACCATGCAGGAGAAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320740 lncRNA upstream 680 4469605 ~ 4470442 (+) True G283003
TU320741 lncRNA upstream 1788 4469119 ~ 4469334 (+) True G283004
TU320729 lncRNA upstream 34566 4436258 ~ 4436556 (+) True G282992
TU320728 lncRNA upstream 34924 4435924 ~ 4436198 (+) True G282991
TU320531 lncRNA upstream 36668 4432387 ~ 4434454 (+) True G282804
TU320743 lncRNA downstream 55 4471619 ~ 4472426 (+) True G283006
TU320744 lncRNA downstream 1132 4472696 ~ 4472902 (+) True G283007
TU320745 lncRNA downstream 1345 4472909 ~ 4473592 (+) True G283008
TU320534 lncRNA downstream 58542 4530106 ~ 4531307 (+) True G282807
TU320544 lncRNA downstream 65539 4537103 ~ 4617741 (+) True G282817
CI01000071_04464134_04466967.mRNA mRNA upstream 3889 4464134 ~ 4467233 (+) True CI01000071_04464134_04466967
CI01000071_04443263_04450257.mRNA mRNA upstream 19862 4443186 ~ 4451260 (+) True CI01000071_04443263_04450257
CI01000071_04228627_04229463.mRNA mRNA upstream 241551 4228627 ~ 4229571 (+) True CI01000071_04228627_04229463
CI01000071_04206342_04211122.mRNA mRNA upstream 259989 4206211 ~ 4211133 (+) True CI01000071_04206342_04211122
CI01000071_04163270_04188267.mRNA mRNA upstream 280549 4163270 ~ 4190573 (+) True CI01000071_04163270_04188267
CI01000071_04500188_04515251.mRNA mRNA downstream 28624 4500188 ~ 4515251 (+) True CI01000071_04500188_04515251
CI01000071_04518557_04528364.mRNA mRNA downstream 46993 4518557 ~ 4528452 (+) True CI01000071_04518557_04528364
CI01000071_04534337_04569325.mRNA mRNA downstream 62773 4534337 ~ 4569325 (+) True CI01000071_04534337_04569325
CI01000071_04584728_04585430.mRNA mRNA downstream 113164 4584728 ~ 4585721 (+) True CI01000071_04584728_04585430
CI01000071_04589416_04602399.mRNA mRNA downstream 116760 4588324 ~ 4602495 (+) True CI01000071_04589416_04602399
TU319744 other upstream 1414591 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 1642518 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3093452 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 3549026 905217 ~ 922096 (+) True G280443
TU318001 other upstream 3667805 799775 ~ 799876 (+) True G280464

Expression Profile