RNA id: TU321358


Basic Information

Item Value
RNA id TU321358
length 282
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G283557
representative True

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 5064632 ~ 5064913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGGAGACAGCACTGCACTGATTTGCTTTCTCATAGATTTAATTTAATTTAAGGATATCGATCCTGTCTGACTTGGGAAACCAGAGTGAATCGAATGTGATTTAGTTTGAACAAAACATTATTAAAATTAATTTGCAAACAATCACAAAGTCTCAAAACATACATAGAATGGTAGTGGGTAAAAAGGTAACAAAAGAAACTATTCTTCCATCTGTTTGTGAAGATGATGGAGATGAAGGTGGAAAAGAAGAGGATTTGGGAGGAATTGCAAGCAGGCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321238 lncRNA upstream 74928 4982595 ~ 4989704 (+) True G283457
TU321200 lncRNA upstream 94443 4969068 ~ 4970189 (+) True G283422
TU321201 lncRNA upstream 99191 4962938 ~ 4965441 (+) True G283423
TU321199 lncRNA upstream 152144 4906621 ~ 4906962 (+) True G283421
TU321220 lncRNA upstream 240844 4822773 ~ 4823788 (+) True G283442
TU321385 lncRNA downstream 878 5065791 ~ 5066007 (+) True G283580
TU321372 lncRNA downstream 48684 5113597 ~ 5115165 (+) False G283570
TU321375 lncRNA downstream 48860 5113773 ~ 5115165 (+) False G283570
TU321373 lncRNA downstream 48968 5113881 ~ 5115165 (+) False G283570
TU321374 lncRNA downstream 48968 5113881 ~ 5114466 (+) True G283570
CI01000071_05002535_05056745.mRNA mRNA upstream 7224 5002189 ~ 5057408 (+) True CI01000071_05002535_05056745
CI01000071_04982029_04982493.mRNA mRNA upstream 82092 4981356 ~ 4982540 (+) True CI01000071_04982029_04982493
CI01000071_04903716_04959830.mRNA mRNA upstream 104771 4903716 ~ 4959861 (+) False CI01000071_04903716_04959830
CI01000071_04851502_04865548.mRNA mRNA upstream 199084 4851502 ~ 4865548 (+) True CI01000071_04851502_04865548
CI01000071_04834539_04839129.mRNA mRNA upstream 225277 4834326 ~ 4839355 (+) True CI01000071_04834539_04839129
CI01000071_05081168_05081463.mRNA mRNA downstream 16255 5081168 ~ 5082153 (+) True CI01000071_05081168_05081463
CI01000071_05082669_05087793.mRNA mRNA downstream 17387 5082300 ~ 5087817 (+) True CI01000071_05082669_05087793
CI01000071_05102723_05110135.mRNA mRNA downstream 37810 5102723 ~ 5110220 (+) True CI01000071_05102723_05110135
CI01000071_05142025_05161947.mRNA mRNA downstream 77112 5142025 ~ 5162294 (+) True CI01000071_05142025_05161947
CI01000071_05167170_05195192.mRNA mRNA downstream 101514 5166427 ~ 5195429 (+) True CI01000071_05167170_05195192
TU319744 other upstream 2008101 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 2236028 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3686962 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 4142536 905217 ~ 922096 (+) True G280443
TU318001 other upstream 4261315 799775 ~ 799876 (+) True G280464

Expression Profile