RNA id: TU322923


Basic Information

Item Value
RNA id TU322923
length 382
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G284936
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2458024 ~ 2458405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATTGTTTGGTCAGACACATTCACACCAGTGGCCTGCTGGAGGTCATTTTGTAGGGCTCTGTCAGTGCTCATCCTGTTCCTCCTTGCACAAAGGAACAGATACCGGTCCTGCTGATGGGTTAAGGACCTTCTACGGCCCTGTCCAGCTCTCCTAGAGTAACTGCCTGTCTCCTGTAATCACCTCCATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGGCATTTCACGAGTTCACACTTACAAATAATCAGATAGTAAATAGTATGCGTAATAGTATGCGTATTTGGCGTGCTGTCCGAGGAGAGGGCTCCGAGCTCGATATTTGGCCCGAACCCAGAGTACTCCCCCCATATTCCGGTTAGGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322746 lncRNA upstream 17807 2438665 ~ 2440217 (+) True CI01000072_02432156_02442588
TU322718 lncRNA upstream 20401 2433967 ~ 2437623 (+) False CI01000072_02432156_02442588
TU322717 lncRNA upstream 22823 2433967 ~ 2435201 (+) False CI01000072_02432156_02442588
TU322723 lncRNA upstream 24140 2433814 ~ 2433884 (+) True CI01000072_02432156_02442588
TU322916 lncRNA upstream 42514 2415300 ~ 2415510 (+) True G284929
TU322930 lncRNA downstream 16527 2474932 ~ 2475168 (+) True G284943
TU322758 lncRNA downstream 39527 2497932 ~ 2528331 (+) True G284784
TU322716 lncRNA downstream 47991 2506396 ~ 2509685 (+) True G284743
TU322713 lncRNA downstream 71048 2529453 ~ 2530167 (+) True G284740
TU322699 lncRNA downstream 71999 2530404 ~ 2532936 (+) True G284729
CI01000072_02452424_02456657.mRNA mRNA upstream 1213 2451692 ~ 2456811 (+) True CI01000072_02452424_02456657
CI01000072_02432156_02442588.mRNA mRNA upstream 15207 2432088 ~ 2442817 (+) False CI01000072_02432156_02442588
CI01000072_02422050_02429020.mRNA mRNA upstream 28593 2418451 ~ 2429431 (+) False CI01000072_02422050_02429020
CI01000072_02390649_02398813.mRNA mRNA upstream 58800 2389181 ~ 2399224 (+) True CI01000072_02390649_02398813
CI01000072_02351008_02356285.mRNA mRNA upstream 100944 2351008 ~ 2357080 (+) True CI01000072_02351008_02356285
CI01000072_02460431_02474361.mRNA mRNA downstream 1338 2459743 ~ 2474404 (+) True CI01000072_02460431_02474361
CI01000072_02569674_02570734.mRNA mRNA downstream 110680 2569085 ~ 2571972 (+) True CI01000072_02569674_02570734
CI01000072_02624054_02627217.mRNA mRNA downstream 165649 2624054 ~ 2627293 (+) True CI01000072_02624054_02627217
CI01000072_02880628_02899254.mRNA mRNA downstream 422223 2880628 ~ 2899292 (+) True CI01000072_02880628_02899254
CI01000072_03035128_03046287.mRNA mRNA downstream 576723 3035128 ~ 3046547 (+) True CI01000072_03035128_03046287
TU322715 other upstream 472884 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 2106736 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1511852 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 1710699 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 1710699 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 1766433 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 1880314 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile