RNA id: TU322930


Basic Information

Item Value
RNA id TU322930
length 237
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G284943
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 2474932 ~ 2475168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGGTCCTAAGCAAACATCCAAGGGGGCCTCAAGATCATTTAAAATGATTTAAAATATGATAAAACAAGATATTAAAATTGTTGGCATCAATAGCCTTGTGGGCAGCACGCCAACCCGCTTCTGGGGACCCGAGTTCGAGTCCTGGCTCGCGTTCCTTTCCCAATCCCACCCCCCCTCTCTCTCCCACTTCGCTTCCTGTCTGAATACTGTCCTATCGCAATAAAGGCAAAAACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322923 lncRNA upstream 16527 2458024 ~ 2458405 (+) True G284936
TU322746 lncRNA upstream 34715 2438665 ~ 2440217 (+) True CI01000072_02432156_02442588
TU322718 lncRNA upstream 37309 2433967 ~ 2437623 (+) False CI01000072_02432156_02442588
TU322717 lncRNA upstream 39731 2433967 ~ 2435201 (+) False CI01000072_02432156_02442588
TU322723 lncRNA upstream 41048 2433814 ~ 2433884 (+) True CI01000072_02432156_02442588
TU322758 lncRNA downstream 22764 2497932 ~ 2528331 (+) True G284784
TU322716 lncRNA downstream 31228 2506396 ~ 2509685 (+) True G284743
TU322713 lncRNA downstream 54285 2529453 ~ 2530167 (+) True G284740
TU322699 lncRNA downstream 55236 2530404 ~ 2532936 (+) True G284729
TU322953 lncRNA downstream 63347 2538515 ~ 2538721 (+) True G284966
CI01000072_02460431_02474361.mRNA mRNA upstream 528 2459743 ~ 2474404 (+) True CI01000072_02460431_02474361
CI01000072_02452424_02456657.mRNA mRNA upstream 18121 2451692 ~ 2456811 (+) True CI01000072_02452424_02456657
CI01000072_02432156_02442588.mRNA mRNA upstream 32115 2432088 ~ 2442817 (+) False CI01000072_02432156_02442588
CI01000072_02422050_02429020.mRNA mRNA upstream 45501 2418451 ~ 2429431 (+) False CI01000072_02422050_02429020
CI01000072_02390649_02398813.mRNA mRNA upstream 75708 2389181 ~ 2399224 (+) True CI01000072_02390649_02398813
CI01000072_02569674_02570734.mRNA mRNA downstream 93917 2569085 ~ 2571972 (+) True CI01000072_02569674_02570734
CI01000072_02624054_02627217.mRNA mRNA downstream 148886 2624054 ~ 2627293 (+) True CI01000072_02624054_02627217
CI01000072_02880628_02899254.mRNA mRNA downstream 405460 2880628 ~ 2899292 (+) True CI01000072_02880628_02899254
CI01000072_03035128_03046287.mRNA mRNA downstream 559960 3035128 ~ 3046547 (+) True CI01000072_03035128_03046287
CI01000072_03066306_03101316.mRNA mRNA downstream 591138 3066306 ~ 3101333 (+) True CI01000072_03066306_03101316
TU322715 other upstream 489792 1981530 ~ 1985140 (+) True G284742
TU321805 other upstream 2123644 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU323494 other downstream 1495089 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 1693936 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 1693936 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 1749670 4232318 ~ 4232421 (+) False G286474
TU324694 other downstream 1863551 4338719 ~ 4343183 (+) False CI01000072_04338747_04342064

Expression Profile