RNA id: TU340214


Basic Information

Item Value
RNA id TU340214
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G299667
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2200866 ~ 2201076 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACATCCTCACCATGAAAAATAATACAAATAGCCTCAACACCAAATATTTTTAACTACTGTACTTTTCATGATGTTTGAAGATTATTTTGCATTAGAATCTGTTGTGGTTGGTTTTCATATTTTAACGCCCCCTGAACATCACACATCTTCGTGGTCAGCAGTGGCAGAAGCTGTGGTTTAACTCACAACTCACAAACATGAAACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340213 lncRNA downstream 12 2200642 ~ 2200854 (-) True G299666
TU340198 lncRNA downstream 57721 2142885 ~ 2143145 (-) True G299651
TU340197 lncRNA downstream 61242 2139296 ~ 2139624 (-) True G299650
TU340173 lncRNA downstream 110205 2090410 ~ 2090661 (-) True G299626
TU340172 lncRNA downstream 111489 2089114 ~ 2089377 (-) True G299625
TU340217 lncRNA upstream 25114 2226190 ~ 2259332 (-) True G299670
TU340223 lncRNA upstream 54363 2255439 ~ 2269317 (-) False G299672
TU340226 lncRNA upstream 54363 2255439 ~ 2267081 (-) True G299672
TU340254 lncRNA upstream 78153 2279229 ~ 2286071 (-) True G299699
TU340266 lncRNA upstream 120750 2321826 ~ 2322795 (-) True G299711
CI01000086_02192695_02193522.mRNA mRNA downstream 7100 2192635 ~ 2193766 (-) True CI01000086_02192695_02193522
CI01000086_02032793_02044182.mRNA mRNA downstream 156684 2032712 ~ 2044182 (-) True CI01000086_02032793_02044182
CI01000086_02018950_02030464.mRNA mRNA downstream 170341 2018820 ~ 2030525 (-) True CI01000086_02018950_02030464
CI01000086_01994840_02008387.mRNA mRNA downstream 192479 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
CI01000086_01948087_01983560.mRNA mRNA downstream 217306 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_02366362_02373059.mRNA mRNA upstream 165192 2366268 ~ 2373059 (-) False CI01000086_02366362_02373059
CI01000086_02400288_02400580.mRNA mRNA upstream 198782 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02403053_02403317.mRNA mRNA upstream 201796 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02543856_02545475.mRNA mRNA upstream 341292 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
CI01000086_02610598_02642920.mRNA mRNA upstream 409491 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
TU340104 other downstream 297447 1903205 ~ 1903419 (-) True G299570
TU340045 other downstream 505689 1668206 ~ 1695177 (-) False G299528
TU340046 other downstream 505689 1668206 ~ 1695177 (-) True G299528
TU339566 other downstream 939629 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 1074068 1126738 ~ 1126798 (-) True G299107
TU340155 other upstream 163255 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 664606 2865682 ~ 2868103 (-) False G299598
TU340143 other upstream 664606 2865682 ~ 2868103 (-) True G299598

Expression Profile