RNA id: TCONS_00017573


Basic Information

Item Value
RNA id TCONS_00017573
length 798
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_008890
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 722475 ~ 1003553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtattttgtgattttagaCACGGGACTTTTATCTCTGCTTATcagtgacgtcatcaggcggcgccgcgCTCCTGTTTGTTGTGAATCTACTCGAGAAAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagACCTGATGCCACTCAAAAAGGAGAGTCAAGATCAGAATGAAATTGAAGAGAAACACCAACATAAGAAAATACCTGAAGAACGAGAACAGAGGAAAACCTCTTCAGAAAGAACAGCCCAGAAGACCGAATCTAACACCTGCcatgagtgtggaaagagtttcactagGAAACAATCCTTTACAAaacacatgagagttcacactggagCAAAACCCTACACTTGcagtcagtgtggaaagagtttcacttgGAAACAAAACCTTACGATGCatatgatgattcacactggagaaaagccccACGCCTGCCTGTACTGTGAAAAGAGTTTCATTAGTAAACAAAGCCTTACAAACCACATGGAGGTTCACACTGGGGGAAAACCTCACACTTgccatcagtgtggaaagagtttcacttgGAAACAATACCTTACACagcacatgaggattcacactggagaaaagcctcaCAGTTGTCAGCAATGTGGAAAAAGTTTCACTTGGACACAATCTTATAGAAATCATATGAGAAATCACACTAAAGAAAGGCCTTACGTTTGCc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019099 lncRNA downstream 1634 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 95968 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 128017 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 134113 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 292846 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019100 lncRNA upstream 78873 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 83968 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 102792 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 135738 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019104 lncRNA upstream 141105 875328 ~ 875985 (-) True XLOC_008897
TCONS_00017572 mRNA downstream 1897 724725 ~ 727479 (-) False XLOC_008890
TCONS_00017563 mRNA downstream 24911 685007 ~ 704465 (-) False XLOC_008889
TCONS_00017565 mRNA downstream 24957 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017566 mRNA downstream 24968 700397 ~ 704408 (-) True XLOC_008889
TCONS_00017564 mRNA downstream 34212 694653 ~ 695164 (-) False XLOC_008889
TCONS_00017574 mRNA upstream 2299 736522 ~ 739229 (-) True XLOC_008891
TCONS_00017575 mRNA upstream 7975 742198 ~ 745672 (-) True XLOC_008892
TCONS_00017576 mRNA upstream 15007 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017577 mRNA upstream 16018 750241 ~ 755023 (-) False XLOC_008890
TCONS_00017578 mRNA upstream 23965 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017537 other downstream 303620 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 379809 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 587567 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1100748 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1531746 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1890805 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2002160 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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