RNA id: TCONS_00017575


Basic Information

Item Value
RNA id TCONS_00017575
length 596
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_008892
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 742198 ~ 745672 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtgacgtcatcaggcggcggcGCACTCCTGTTTGTTGTGAATCTACTCGAGAAAGAACAGCAGAttattataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacaggaagacattgaagatattttgagagtgaaacatgaagagattgaagaaacatttacAGTCAAAAAAGAAGACCCTGAGGAACAgacagaCCCGATGCCATTCAAAGAGGAGAGTCTAGATCAGAATGAAGTAGAAGAGAAGGATCTTTATGAAGGATGTCGTGACTTGAATCGGAACAGTCGAACACCCCCTCCTCATGGAAAAAGAGCCCAGAAAGCTAAACCCTACACCTGCCATCTCTGCGGGAAAAGTTTCACGCGGAAAAAGATCGTTACAGACCACATGAGGCTTCACACTGGAGAACGGTTTTACGATTGTCAACATTGCGAAAAGAGTTTCGCTTGGGAACAAAACTTTAGgcaccacatgaggattcacactggacgAAAACCTTACgtctgccaacagtgtggaaagagtttcacttgGAAACAAAACCTTAGAGAGCAtgtgatga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-186 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDART00000155533

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019099 lncRNA downstream 14456 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 108790 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 140839 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 146935 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019097 lncRNA downstream 305668 434462 ~ 436530 (-) True XLOC_008875
TCONS_00019100 lncRNA upstream 67424 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 72519 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 91343 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 124289 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019104 lncRNA upstream 129656 875328 ~ 875985 (-) True XLOC_008897
TCONS_00017574 mRNA downstream 2969 736522 ~ 739229 (-) True XLOC_008891
TCONS_00017573 mRNA downstream 7975 729376 ~ 734223 (-) False XLOC_008890
TCONS_00017567 mRNA downstream 7995 722475 ~ 734203 (-) False XLOC_008890
TCONS_00017572 mRNA downstream 14719 724725 ~ 727479 (-) False XLOC_008890
TCONS_00017565 mRNA downstream 37779 699742 ~ 704419 (-) False XLOC_008889
TCONS_00017576 mRNA upstream 3558 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017577 mRNA upstream 4569 750241 ~ 755023 (-) False XLOC_008890
TCONS_00017578 mRNA upstream 12516 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017579 mRNA upstream 20088 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 168126 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017537 other downstream 316442 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 392631 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 576118 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1089299 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1520297 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1879356 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1990711 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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