RNA id: CI01000112_01027075_01062602.mRNA


Basic Information

Item Value
RNA id CI01000112_01027075_01062602.mRNA
length 1104
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01000112_01027075_01062602
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1027075 ~ 1062602 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTATGACCCAGAAAATTCAGGCTTCATCAGTACTGAGCGTTTCCGAGATCTCCTTGCGGCTCATGGATCAGAACTGGACCCTCACAAGCTGGAGGTTCTTCTTGCCCTGGCTGACGGAAATGCTGACGGAAAGATCTGCTACCAGGATTTTGTTAACCTGGTGAGTTCTGCAGATGAACTTGAGATGAGCAACAAACGTTCGAACAGTTTCCGTCGAGCGATCCTGCAGGGGAGTCGGCAGCTCAGGAATTCCGCACTGAGAGAGGAAGTAGGCTTGGGTCTGTCTCGGAGACTCGTGCGTCATGTTGCTTATGAAACTTTGCCCAGAGAGGTGGACCGCAAATGGTACTTTGACAGTTACACCTACTGTCCACCACCATGGCTTATGCTGGTCATCACTATAGCAGAGGTTGTTGTCTTTATATATTACGGACTGCAGCTGAACCGCTGGGTTCTGCAGGTGTCATCGCCGTACTTCCTGAAGGGCCCATTGCCATACCATCCGCAGCTCCGAGCTCAGGCCTGGCGCTATTTTAGCTACATCTTCATGCACGCTGGAATAGAACACCTGGGCCTAAACATGGCCATGCAACTTTTGGTGGGTGTGCCGTTAGAGATGGTCCATGGAGCTTTGAGAATTGGCCTGGTATATGTGTGTGGCGTACTGGCAGGTTCATTGGCTGTGTCAGTAACGGACATGACAGCACCTGTGGTCGGATCATCAGGGGGAGTCTATGCTCTGGTCTCCGCCCACCTCGCCAATGTCGTCATGAACTGGTCAGGGATGAAGTGTCAGTTCAAGCTCTTTCGCATGGCAATGGCTCTGGTGTGCATGAGTGTGGAGTTTGGTCGTGCCGTCTGGCTCCGATTCTATCCCCCAGCTTTCCCACCATGCCCTAATCCCAGCTTTGTGGCCCATCTGGGGGGTGTGGCAGTGGGCCTCACCCTTGGTGTTGTGGTTCTTCAGAACTATGAACAGCGTTTGCAGGAACAGTCCTTGTTCTGGATCTTCTTCAGTGTCTACACACTCTTTATCCTCTGTGGAATCTTCTGGAACATTTTCGCTTACAATCTCTTGGATGTCAAGTTACCCCCACCTCCA

Function

GO:

id name namespace
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373211 lncRNA downstream 31628 995182 ~ 995447 (-) True G328350
TU373264 lncRNA downstream 43478 982398 ~ 983597 (-) True G328403
TU373220 lncRNA downstream 110497 913512 ~ 916578 (-) True G328359
TU373210 lncRNA downstream 113657 912413 ~ 913418 (-) True G328349
TU373212 lncRNA downstream 115286 909055 ~ 911789 (-) True G328351
TU373235 lncRNA upstream 92165 1154767 ~ 1158341 (-) True G328374
TU373228 lncRNA upstream 95891 1158493 ~ 1161521 (-) True G328367
TU373327 lncRNA upstream 164244 1226846 ~ 1227061 (-) True G328454
TU373332 lncRNA upstream 169524 1232126 ~ 1233118 (-) True G328457
TU373527 lncRNA upstream 214331 1276933 ~ 1277185 (-) True G328640
CI01000112_01010850_01018328.mRNA mRNA downstream 7738 1010689 ~ 1019337 (-) True CI01000112_01010850_01018328
CI01000112_01001591_01002671.mRNA mRNA downstream 24271 1001578 ~ 1002804 (-) True CI01000112_01001591_01002671
CI01000112_00962490_00964721.mRNA mRNA downstream 62354 961737 ~ 964721 (-) True CI01000112_00962490_00964721
CI01000112_00924047_00930234.mRNA mRNA downstream 96819 923835 ~ 930256 (-) True CI01000112_00924047_00930234
CI01000112_00844872_00849049.mRNA mRNA downstream 178012 844609 ~ 849063 (-) True CI01000112_00844872_00849049
CI01000112_01092142_01094413.mRNA mRNA upstream 29070 1091672 ~ 1094481 (-) True CI01000112_01092142_01094413
CI01000112_01120464_01124295.mRNA mRNA upstream 57485 1120087 ~ 1124295 (-) True CI01000112_01120464_01124295
CI01000112_01324078_01345821.mRNA mRNA upstream 261476 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01367862_01375489.mRNA mRNA upstream 304849 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01437714_01440420.mRNA mRNA upstream 374855 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
TU373156 other downstream 158439 868518 ~ 868636 (-) True G328308
TU373157 other downstream 232129 794847 ~ 794946 (-) True G328309
TU373185 other downstream 245291 780164 ~ 781784 (-) False G328332
TU373528 other upstream 223490 1286092 ~ 1286524 (-) True G328641
TU373529 other upstream 224053 1286655 ~ 1286958 (-) True G328642
TU374646 other upstream 567174 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 735414 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 735414 1798016 ~ 1809739 (-) False G329559

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063778 False 1858 mRNA 0.48 10 NC_007117.7 18624955 ~ 18698669 (-)