RNA id: CI01000112_01120464_01124295.mRNA


Basic Information

Item Value
RNA id CI01000112_01120464_01124295.mRNA
length 3010
RNA type mRNA
GC content 0.49
exon number 3
gene id CI01000112_01120464_01124295
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1120087 ~ 1124295 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTTCCCCATCAAAGTGGCCTGGGAGCCCAGAATGAGAATTGTCACTGGAACATCCCAGTCACCAAAAGCAGCAGCGGCAACCAGGATAAAGTGATTATTAACCATAACAACTCAGACACTTGGCCTTCCATTACATACGGCAAGAGCCAGCAGACACCAGAATGCACCTTGGACGCTGAACGCACATCAGAGTTTGTAGGCAACAGTAGTAGCACTATCATGGCTACAGGAGCTAGCCAGCAGGGTCATTACCCAATCAGCAAAGCCAGCGTTAATCTCACTTCTAGTATGGTCTCTAGTCAAGGTGGCCCTACCAGGGGGTGGGTCTCAGAAGGAAAGATTGACTTTCCCATGGGCAGTACAGGGCAGTCCAGCTGGGGTGCCTCTAATCTGAACCTCAACCCCAGTGCCAACCCTGCTGCTTGGCCAGCTCTTGGACATGAGGGGCCTGGGGTAGGGTCAGGCCCTAGTAGCATGGTTTGCTCAAATTCACTTTCACTTAGTATGTGTGGCCAAGGAGGAGTGGCACCACCTCACGGCACCATTGGAAATGGTAGCATTGGTTGTGTCAATGGAAACCTTGTAGGGGACTGTGCATGGGGCAACCCAGATATCCCAGAACAGCACCAGTCTCCCACAAATGTATCTTTCAACATGAAACCTCCTAACCTTAAAACTGATGGACCAAATAACACTAAACCAGAGCCAATGAGTCCAGTGAACAGCTGGAGAGGAAACCTTAGTCAGTCACCTACTGAGCCTGCCAGTGAAGATGGAACTGCTTTCTGGGGCAACCGAGATGCCAAAAATGGAGAATCAAAGGATTCCGGCTGGGATTCTGCAGGGGTCTCCTCTTGGGGGCAGGGAGGAGCTAGCAGTGGTGGCGGCTGGGGTGACTGGAGCAAACAGCCAAGCACTGACGGTACAGGGTGGGATGCTAATGATGGTCCTTCCCAAGAACATATGAGTTCCTGGGGCCCTGATACTCCAGCAAGTGAGGGTAGCAGGGATAGTAGTGAGGGCCACTCAAGAAGAAGAGAGAGGTCCTCAAGTGATGATTTGGCCCCTTTGCTGCCGAGGCAGGACTTGGACCCACGTGTCCTCTGCAACTCAGGCTGGGGACAAACTCCAGTTCGTCAACACACTGTTTGGGAAATGGAAGAAAGTCCAGACAAAAAGAATGATGCAGGGACTGAGGTCTGGGGGTCTTCCTCCAACACACCTTTAACTGGGCCTGCACCACCTCCTCCTGGATCTGCCAATCCCAACCTCAATGCACCTCCTAGAATGGACACAAGCAAGAGCGAGGGATCTTGCAGAGCCACACCAAACTCAGGCTGGGGAGGATCGGTCCCAGCCTCTGCTCAACCTAATGGTGGATGGGGGGAACCACCTGTAAATAAAAAGGTTCCCAATGGATCAGTTTGTGGCTGGGGTGATCCCATTGCTGAGGGTATCAACAGCAATGGCTGTAATGGCCAATCTTGGGCTTCTGAAGAAAAGTCTTCTAGCTGGGATGATGGTACTTCTCAGAAAAAAACAAAAGGTTGGGGTGATGGACCCAAAACTTCCTCAGGCTGGGGAAGTAGTGGCAGTGGGAATAGTGGAGAGTGGGGTGACCCTTCAGAAATACGGAAGGATGGCTCTGGAAGTAACTCTAGGGACCCTGAAAACAGAAACTGGAAGGAAACCCAGAGAGGTTGGGGTAAAGCAGCACCAGCACAGGGTGGTGGTTGGGGTGATGCTCAACATTCCAATGGTTCAGCCCAAGGTTGGGGTGGAAAACTTCAGGAATCCACATGTGGCAACAGTGGAGCTGGAGGCATAGGATCATGGTGTGGCCCAAATTCTGTAAAACAGAACAGCTCTGGCTGGGCATCAGGAGGACGCCAGGATCCAGGAGATGAGGTCACAGGCTGGGAAGAACCATCTCCATCTTCTATTCGTCGCAAAATGGAAATTGATGATGGGACCTCCACCTGGGGTGACCCCAATGCTTACTGCAAGAGTGTGAACATGTGGGACAGGAATAACTCCCAAAATCATCCAGGAACCAGCAACAATGGCAGCAGTAATAGCCTAACTGGGCCAAACAACAACAACAGCAACCATCACCAACACCACAGCCAAGGTCCCACTCAGAACCATGTCAATGGCAGCAACAACAATGGCTCACCCAGTCAAGGTGAATCTCCTCTTAACAGGGTGCCCATGGGGAACCCAGGCTGGGGAGAGCTTCCTAATGTCCAGCCAAATACAGAACCCTCTTCATGGGGCGAGCCAGCCAATTCCAACCCCTCTGTGGACAATGGCACTTCAGCTTGGGGCCAGCCCACTAAGGGCTGTGGAAGATGGGGTGAAAGTGCCCGTGACTCCAGTGGACCTTATGGCAGAGGAAATGCACCTGCTGGATCAGGCCCCTGTCAGGAAGGTCCCAAACCTATGCAAGATGGCTGGGGATCTGGAGGGGAAGAGATTGGCATGAACACCAGCCAGTGGGATGCTGATGATGGTGACATGTGGAACAGTCCCACATCCCAAGACTCCTCTTGTAATTCCTGGGGTCAATCCAAGAAGGGCCCACAAAGGGTAATTGAAGCCATTCAAAGCCATCAGTACTCTGTCCCGTAATGAATACTCAGTGTCACATATTCATTGTGTGGTTAAGATATGGTTTATGTAAACATTTTTTTTTTTTCTGAATAATATTTTACTTATAATTACTGTGTGTGTGTGTGTGTGTATGTATGTATATGGGTCAAAGACGAGACGTCACCATTTTGATGTCCACATCAAATTACATTTACTAAAGTTATTTTATGTACATATAAGCTGAAGCAGAAGTTTCATCATTCAGTGTAATGCAAATTCTCTGTTATACCAGTGTCATCCATTACACTGAATGACAGTATCACTGTATAAATAACAATTTTAGCATCTTATTTATATTACAGATAAATGAGGAATGTTTAGTACTGACAAATACTGTATGTGTTAAACTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373231 lncRNA downstream 22815 1040046 ~ 1097272 (-) True G328370
TU373238 lncRNA downstream 41811 1023486 ~ 1078276 (-) True G328377
TU373211 lncRNA downstream 124640 995182 ~ 995447 (-) True G328350
TU373264 lncRNA downstream 136490 982398 ~ 983597 (-) True G328403
TU373220 lncRNA downstream 203509 913512 ~ 916578 (-) True G328359
TU373235 lncRNA upstream 30472 1154767 ~ 1158341 (-) True G328374
TU373228 lncRNA upstream 34198 1158493 ~ 1161521 (-) True G328367
TU373327 lncRNA upstream 102551 1226846 ~ 1227061 (-) True G328454
TU373332 lncRNA upstream 107831 1232126 ~ 1233118 (-) True G328457
TU373527 lncRNA upstream 152638 1276933 ~ 1277185 (-) True G328640
CI01000112_01092142_01094413.mRNA mRNA downstream 25606 1091672 ~ 1094481 (-) True CI01000112_01092142_01094413
CI01000112_01027075_01062602.mRNA mRNA downstream 57485 1027075 ~ 1062602 (-) True CI01000112_01027075_01062602
CI01000112_01010850_01018328.mRNA mRNA downstream 100750 1010689 ~ 1019337 (-) True CI01000112_01010850_01018328
CI01000112_01001591_01002671.mRNA mRNA downstream 117283 1001578 ~ 1002804 (-) True CI01000112_01001591_01002671
CI01000112_00962490_00964721.mRNA mRNA downstream 155366 961737 ~ 964721 (-) True CI01000112_00962490_00964721
CI01000112_01324078_01345821.mRNA mRNA upstream 199783 1324078 ~ 1345821 (-) True CI01000112_01324078_01345821
CI01000112_01367862_01375489.mRNA mRNA upstream 243156 1367451 ~ 1377374 (-) True CI01000112_01367862_01375489
CI01000112_01437714_01440420.mRNA mRNA upstream 313162 1437457 ~ 1440508 (-) True CI01000112_01437714_01440420
CI01000112_01486968_01488917.mRNA mRNA upstream 361076 1485371 ~ 1489501 (-) True CI01000112_01486968_01488917
CI01000112_01517833_01520418.mRNA mRNA upstream 393433 1517728 ~ 1520546 (-) True CI01000112_01517833_01520418
TU373156 other downstream 251451 868518 ~ 868636 (-) True G328308
TU373157 other downstream 325141 794847 ~ 794946 (-) True G328309
TU373185 other downstream 338303 780164 ~ 781784 (-) False G328332
TU373528 other upstream 161797 1286092 ~ 1286524 (-) True G328641
TU373529 other upstream 162360 1286655 ~ 1286958 (-) True G328642
TU374646 other upstream 505481 1629776 ~ 1633322 (-) True G329587
TU374605 other upstream 673721 1798016 ~ 1800658 (-) False G329559
TU374607 other upstream 673721 1798016 ~ 1809739 (-) False G329559

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063780 True 5484 mRNA 0.50 19 NC_007117.7 18718667 ~ 18751696 (-)