RNA id: CI01000112_03608324_03621681.mRNA


Basic Information

Item Value
RNA id CI01000112_03608324_03621681.mRNA
length 1012
RNA type mRNA
GC content 0.50
exon number 8
gene id CI01000112_03608324_03621681
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3608324 ~ 3621688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTGGACCGAAAGAATGGCGAGATCGATGAGTTGAAGAGCATGTATCGTGGGAAGCAGAAGGAGGCAGATGAGACGGTTCGGAGGCTGGAAAAGAGAGTTCAAAGCCTGCTGCGAGAGTCCCAGGTCATCCGACAGACCAAAGAGAAACAGATCAGCGAGCTGAAGAAAATGTCTGATCAAAGTGCTGAATCTCTGAAAAACGAATGGGAGAAGAAGTTCCATGCTGCGGTGGCGGAGATGGAACAGGATAAGTTTGAGCTGCAGAAGAAGCACACAGACAACATCCAGGAGTTGCTGGAGGACACCAACCAACGACTCGCCAAGATGGAGGCCGAGTACAGTGGCCAGACGCAGGCCACCGCTGCTGTTGTCAATATGTCAGCTGAGATATGGTTGTCTCATTTTCAAATGAACACCATCCTAGATCCTAGATGTTCTTTGAGGGCTGAGCCATGCTTTGCTGCTTCACATGCCTTTTTCATATTCAATCCCAGCATGCTCTGGGTTGTGCTAAAGAACAGAGGCCCACAGGAGCAGATGGTGCATGAGCTGGAGACACGGGTGAAGCAGCTCTCGGTAGAGGTGGAGAACGGGAACCTGCTTCGGCAGAAGGTCACACAGGAGAAAGCCGAGTTAGAGATTCATATCGCTTCCATCAGCGCTGAGCTACAAGAGGCCAACCGCAGGACTGTGTCCCTGCAGAGGGAGATGGAGCAGATGAGAGACCAGCATGAAGACACACTGCAGAAACTTCAGGCCAGACATAACGCTGACGCATCAGAGGTGATTGAGGATTTGGAACAGACTGTGATTCACCTCAAACAGCAGATACAGGAAACTGAAAACAGGAGACAGAGACAGCTCAGGGTCAGTAGCTCACACTTTCCACACCCTTCCATACTGGCAGTGACATCGCTGGAGGACGCAATTCACTGTAGCTTTGGTAGCAGTGGATGTTCACGCTGCTGGTTTGCCCTCATTATTAGTGGGATTCACAACTAACGGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374445 lncRNA upstream 65298 3533229 ~ 3543026 (+) True G329413
TU374409 lncRNA upstream 219873 3388250 ~ 3388451 (+) True G329381
TU374408 lncRNA upstream 220954 3387157 ~ 3387370 (+) True G329380
TU374401 lncRNA upstream 223946 3376281 ~ 3384378 (+) True G329373
TU374359 lncRNA upstream 301445 3306588 ~ 3306879 (+) True G329339
TU374554 lncRNA downstream 189846 3811534 ~ 3882944 (+) True G329517
TU374550 lncRNA downstream 237790 3859478 ~ 3926176 (+) True G329513
TU374549 lncRNA downstream 350428 3972116 ~ 3973883 (+) True G329512
TU375547 lncRNA downstream 482550 4104238 ~ 4104501 (+) True G330383
TU375567 lncRNA downstream 526831 4148519 ~ 4148864 (+) True G330402
CI01000112_03571702_03574425.mRNA mRNA upstream 33624 3571380 ~ 3574700 (+) True CI01000112_03571702_03574425
CI01000112_03344466_03359943.mRNA mRNA upstream 248028 3344466 ~ 3360296 (+) True CI01000112_03344466_03359943
CI01000112_03285278_03286531.mRNA mRNA upstream 321756 3284558 ~ 3286568 (+) True CI01000112_03285278_03286531
CI01000112_03234159_03240113.mRNA mRNA upstream 368211 3233045 ~ 3240113 (+) True CI01000112_03234159_03240113
CI01000112_03192658_03204707.mRNA mRNA upstream 403292 3191661 ~ 3205032 (+) True CI01000112_03192658_03204707
CI01000112_03653384_03730444.mRNA mRNA downstream 31696 3653384 ~ 3730448 (+) True CI01000112_03653384_03730444
CI01000112_03759872_03772553.mRNA mRNA downstream 138115 3759803 ~ 3772982 (+) True CI01000112_03759872_03772553
CI01000112_03861399_03879738.mRNA mRNA downstream 239711 3861399 ~ 3879752 (+) True CI01000112_03861399_03879738
CI01000112_03896750_03921778.mRNA mRNA downstream 275062 3896750 ~ 3923164 (+) True CI01000112_03896750_03921778
CI01000112_03932803_03933881.mRNA mRNA downstream 311115 3932803 ~ 3933912 (+) True CI01000112_03932803_03933881
TU374184 other upstream 676435 2920254 ~ 2931889 (+) True G329194
TU374096 other upstream 990173 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 990173 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 990173 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 2375206 1232022 ~ 1233118 (+) True G328456
TU375960 other downstream 1463032 5084720 ~ 5096971 (+) True G330755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052177 False 3510 mRNA 0.49 26 NC_007114.7 55684449 ~ 56030117 (-)