RNA id: CI01000112_03759872_03772553.mRNA


Basic Information

Item Value
RNA id CI01000112_03759872_03772553.mRNA
length 3264
RNA type mRNA
GC content 0.51
exon number 12
gene id CI01000112_03759872_03772553
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3759803 ~ 3772982 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTAAGAGAGAGAGGAGATTACAGCTGAGCTTCACACTGAAGGCTTTGCTGCTGGAGCTGCAAGAGCCATGAATAGGACACTAACAGATCCTATGGTCAGTAGCTTCAGAGAAGATGACCCACGTCCACCGGTCCCAGGGGAAGAGGGTGAGACGACATGCCACCATCCCAGCAAACTGGCCATGATGAGACCGAAGGATCCTGTGAAAACCATTATGGCTGATCCTCGCTGTTCCACAGCCAGGAGGGATGAGGATGGACTTGGGGAACCTGAGGGCAGTGCATCCCCAGACTCCCCTCTTGCCCGGTGGACCAAATCTTTGCATTTCCTTCTTGGGGACCAGGATGGTGCTCAACTTTTCCGGGCATATCTTGAACGTGAGAAATGTGAGGACACTTTAGATTTTTGGTTCGCCTGCAATGGTTTCAGGCAAATGGACCTCAAGGATACCAAAACGCACCGAGTTGCCAAAGCCATTTACAAGCGGTATATTGAGAACAACAGCGTTGTGGCCAAGCAGCTTAAACCTGCCACTAAGACCTTTATTAGGGATAATATTAAGCGTCAGCAGATTGACTCCGCAATGTTTGATCAGGCTCAAATGGAGATCCAGACAGCTATGGAGGAGAACGCCTATCAGATGTTCTTGACCTCAGACATATACCTTGAGTACGTCAGAACCGGGTGTGAGAACCCCAGTCATGTGAATCCCAATGGACTAGGAGGCCTAAAACTGGTGTGCGGATACTTGCCGATGCCGACTCTAAATGAAGAGGAAGAATGGAGTTGTAATGACTTTAAAGCCAAAGCTTTGGCCACTGTAGTGGGTCTGTCTGCCAAAGCGCTACGGTCACCTCCTTCCCTTCGTGCTGCGGAAGCATTGGAGAAAAGCTACAGTATATTGTCTGGGTTTAATAAAACACCAGGGGAAATCTGGTTTGATGAATTAATACCTGTCATAGCACTTGAGGTTGTAAATGAGGTGACCCATCAAGGTGTGGTGCCAGACAAATGTTTATCTGTCTCAAAGACAGCCCATTGGGAGGGTGATCTTGAAGAAGTGGAGCAGGAATGTGTCACAGCAGGAGAGAGGGGTATGGAGAGCAAGAGAGATTGGAGGGAGGGGCGGCCTGGGTCCTACAGACGGAGTGACCCTGGAAACCCTTATCGTGTTACGTCCGGTTATAGTTTTGCCCCTGCCACCAGTGCCAATGACAGCGAGGTCTCCAGTGATGCCCTGACAGATGACTCTATGTCCATGACAGACAGTAGTGTCGTGCCCCTGGGCGTCTGTTCTGGGCAAGAGTGCAGAGAAAGATCTTGCTGTTACCAGCACTCTAAAATGCTCACGGCTGACATGGAGGAAGATGAAGAACTTTGGGTTCTGGATGATATTGAAAGGAAAGTCATTAGGCTTGCGGTTTTAGTTTGCACAGGAGATGCCATCCCTCCTTACAAGCTGGGAAGTAAAAAACAATTACAGCGAGAGATGCAGCGCAACATGAGGATGAACGGCCAAGTGTCTCTACCTCCGTTTCCTAGGACGCGGCGGCCACCTAAGGAGATGACTCCCGTGGAGCCAGCAGCCTTTGCAGCACAGCTGATAGCCAGGCTGGAACGTCTGAAGCGGGAACAGGAAACCATGAGCTCCCTGGAGGAGAGACTTCAACAGATTCAGGAGGAGGAGGAACGGGATGAATCTGAGGTGTCTGGAAGCAGTGCATCCCACTCTCTGCCTTTGCTCCCTCCTGGCTCTTGTGAGGAGGACCCCCAGGCCATCCTGGACGAGCACCTTTCCCGAGTCCTCAAGACCCCTGGCTGCCAGTCTCCAGGAATGCTTCGGCATTCCCCGCGCTCCCGCTCTCCTGAACAGCGCCCGCTGCCTCGGGGAGGTCCCAGCACCAGGTCACAGTCTGGCTCTGTGAATGGATATGTGCCAGCCAAGACCTTCATCTCCAGACAGTCAACAAAGCACATCCATCACCACTACATCCATCACCACGCTGGGCCCAAAAGCAAGGAGCAGATCGAGGCGGAGGCGACCCAGCGGGTGCAGTGCCTGTGCCATGGAGCTTCAGAATGCTGCTCCGCCCCCTACATTCGCAGCCGGAGTCTGGGCAGAGACCAGTGTGGCAGCCCTGCAGAAGTGGCCTTGGGGCATTCCAGCTCTTTATCCAAGCGTTTGTGTAAATCTGGAGAGGAGGTGAACACGGAAGGGTTGGAGAGCAGTCTCCTCCAGCTGCCAGCTGACAGTACAGACCGCTCTCAAAACGTATGGCAGTGGATCCTGGAGAGTGACCGACAGACCAAGCACAAGCCCCACAGCACTCAAAATGTAAAGAAGTTGCACTGTTTGGATTCCACACGCACACACACCTGGGGAGGAGGCGGAAGCAGTGGGCATCTCCGTGCACACCAGCCCGCACACCCCTTCGTTCAGGACCCCGCCATGCCACCTCTACCCCCTCCCAACACCCTAGCACAGCTGGAAGAGGCCCGCAGACGCCTGGAGGAAGTTTCCAAACCCTCTAAACAGAGACCGAAAGATCCCAAGAAGATGTCAGGTTGCCACGGTAGTTTGGGCTCAGAGACAGTGGTCACGTACTTCTTTTGCGGTGAGGAAATCCCATACCGCCGGATGATGAAAACACACAGCCTCACACTTGGACACTTCAAGGAACAACTAAGGAAAAAAGGCAACTACAGGTACTACTTCAAGAAAGCCAGTGATGAGTTTGAGTGTGGTGCTGTGTTTGAGGAGGTCTGGGACGACTGCACAGTTCTGCCAATGTATGAGGGCAAAATCCTCGGCAAAGTGGAAAGAATGGACTAAAGGAACATGACAGCCCATATGTGGACTTACCCAGCACTCAAGACTAACTCAAAGACAGAAAATAGACATTTTATGAAGCTTAAGAAGTTTAGACGTTTGGCTTACCAAGCTATTGAAGGAATACTAGCCAATGAAGTACAGAGGGATCTGAACCAGCAATGCATCATGAGAAATTGTTCCTTTGCTTTGGAAAACTGAGAGATGTTATGACCAATGAAGATGCAGTTAACCACTTGCTTGTTTGGACTACAACATGCCAACACTGGTGTGTTACCATACCATGAACTGCTGACCAGCATTTGTGATAATTATAGATGTGTATACGTGTGTTGAATGCGAGAATGTGTGCATGTGTGATACAGAGGTGCTCATATGTACACAAAGTTATAATATGCTTCTGTCACAAGTTAAAGACTTTATTGCTATTTA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG:

id description
K04385 AXIN2; axin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374445 lncRNA upstream 216777 3533229 ~ 3543026 (+) True G329413
TU374409 lncRNA upstream 371352 3388250 ~ 3388451 (+) True G329381
TU374408 lncRNA upstream 372433 3387157 ~ 3387370 (+) True G329380
TU374401 lncRNA upstream 375425 3376281 ~ 3384378 (+) True G329373
TU374359 lncRNA upstream 452924 3306588 ~ 3306879 (+) True G329339
TU374554 lncRNA downstream 38552 3811534 ~ 3882944 (+) True G329517
TU374550 lncRNA downstream 86496 3859478 ~ 3926176 (+) True G329513
TU374549 lncRNA downstream 199134 3972116 ~ 3973883 (+) True G329512
TU375547 lncRNA downstream 331256 4104238 ~ 4104501 (+) True G330383
TU375567 lncRNA downstream 375537 4148519 ~ 4148864 (+) True G330402
CI01000112_03653384_03730444.mRNA mRNA upstream 29355 3653384 ~ 3730448 (+) True CI01000112_03653384_03730444
CI01000112_03608324_03621681.mRNA mRNA upstream 138115 3608324 ~ 3621688 (+) True CI01000112_03608324_03621681
CI01000112_03571702_03574425.mRNA mRNA upstream 185103 3571380 ~ 3574700 (+) True CI01000112_03571702_03574425
CI01000112_03344466_03359943.mRNA mRNA upstream 399507 3344466 ~ 3360296 (+) True CI01000112_03344466_03359943
CI01000112_03285278_03286531.mRNA mRNA upstream 473235 3284558 ~ 3286568 (+) True CI01000112_03285278_03286531
CI01000112_03861399_03879738.mRNA mRNA downstream 88417 3861399 ~ 3879752 (+) True CI01000112_03861399_03879738
CI01000112_03896750_03921778.mRNA mRNA downstream 123768 3896750 ~ 3923164 (+) True CI01000112_03896750_03921778
CI01000112_03932803_03933881.mRNA mRNA downstream 159821 3932803 ~ 3933912 (+) True CI01000112_03932803_03933881
CI01000112_03933921_03937412.mRNA mRNA downstream 160939 3933921 ~ 3937708 (+) True CI01000112_03933921_03937412
CI01000112_03956622_03957718.mRNA mRNA downstream 183640 3956622 ~ 3957867 (+) True CI01000112_03956622_03957718
TU374184 other upstream 827914 2920254 ~ 2931889 (+) True G329194
TU374096 other upstream 1141652 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 1141652 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 1141652 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 2526685 1232022 ~ 1233118 (+) True G328456
TU375960 other downstream 1311738 5084720 ~ 5096971 (+) True G330755

Expression Profile