RNA id: CI01000112_03956622_03957718.mRNA


Basic Information

Item Value
RNA id CI01000112_03956622_03957718.mRNA
length 725
RNA type mRNA
GC content 0.51
exon number 2
gene id CI01000112_03956622_03957718
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3956622 ~ 3957867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGAGAAACATTTGTCTGACCATCGTGAACTCTCTGTTGTATTGACAGACCTGTCGAGCAGGGCAGAGGAGAGCGGCTCTCGTGGTATGACTACTACAAACAAGGGAAACAAAGCACTGAAGGTGAAGCGAGAGCCAGGTGAGAATGGCACGAGTCTCACGGATGATGAGCTGGTGTCCATGTCTGTGCGAGAGCTGAACCAGCACTTGCGCGGTCTGACCAAAGAGGAAATCTTGCAGTTGAAACAGCGGCGGCGCACACTCAAAAACCGTGGCTATGCCGCCAGCTGCCGCGTCAAACGTGTCACGCAAAAGGAGGAGCTGGAGAAACAGAAGGCAGAGCTTCAGCAAGAGGTGGAGAAGCTCGCCTCGGAGAACGCCAGCATGAAAGTGGAGCTTGATGTGCTGCGCTCCAAATATGAGGCTCTCCAGAGTTTTGCCAGAACTGTGGCCCGCAGCCCTGTGGCCGGTGCCAGGGGCCCAATCACATCTGTCATAGGGCCCCTCATACCAGGCAAAGTGGCCACTACCAGCGTCATCACTATTGTCAAGACCAAAACAGAAGCACGATCTTAATGCACAAATGGGGAGCATTTTGTAAGTATATTGGTTGGCGTATCCATCAGGCACAGGTTTACTCATGCTATGATACGAGGTGATAACATTCAGCAAGATCTGCTCTGTGACTATAAAAATATAAACAGACAACTCTAAAATCTCTCAGA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process

KEGG:

id description
K09037 MAFF_G_K; transcription factor MAFF/G/K

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU374550 lncRNA upstream 30446 3859478 ~ 3926176 (+) True G329513
TU374554 lncRNA upstream 73678 3811534 ~ 3882944 (+) True G329517
TU374445 lncRNA upstream 413596 3533229 ~ 3543026 (+) True G329413
TU374409 lncRNA upstream 568171 3388250 ~ 3388451 (+) True G329381
TU374408 lncRNA upstream 569252 3387157 ~ 3387370 (+) True G329380
TU374549 lncRNA downstream 14249 3972116 ~ 3973883 (+) True G329512
TU375547 lncRNA downstream 146371 4104238 ~ 4104501 (+) True G330383
TU375567 lncRNA downstream 190652 4148519 ~ 4148864 (+) True G330402
TU375569 lncRNA downstream 192120 4149987 ~ 4150244 (+) True G330404
TU375561 lncRNA downstream 197532 4155399 ~ 4157165 (+) True G330396
CI01000112_03933921_03937412.mRNA mRNA upstream 18914 3933921 ~ 3937708 (+) True CI01000112_03933921_03937412
CI01000112_03932803_03933881.mRNA mRNA upstream 22710 3932803 ~ 3933912 (+) True CI01000112_03932803_03933881
CI01000112_03896750_03921778.mRNA mRNA upstream 33458 3896750 ~ 3923164 (+) True CI01000112_03896750_03921778
CI01000112_03861399_03879738.mRNA mRNA upstream 76870 3861399 ~ 3879752 (+) True CI01000112_03861399_03879738
CI01000112_03759872_03772553.mRNA mRNA upstream 183640 3759803 ~ 3772982 (+) True CI01000112_03759872_03772553
CI01000112_03978196_03991078.mRNA mRNA downstream 20329 3978196 ~ 3991078 (+) True CI01000112_03978196_03991078
CI01000112_04004799_04012301.mRNA mRNA downstream 46708 4004575 ~ 4012680 (+) True CI01000112_04004799_04012301
CI01000112_04020422_04027554.mRNA mRNA downstream 62417 4020284 ~ 4027746 (+) True CI01000112_04020422_04027554
CI01000112_04033996_04035285.mRNA mRNA downstream 76026 4033893 ~ 4035337 (+) True CI01000112_04033996_04035285
CI01000112_04036511_04048219.mRNA mRNA downstream 78644 4036511 ~ 4048332 (+) True CI01000112_04036511_04048219
TU374184 other upstream 1024733 2920254 ~ 2931889 (+) True G329194
TU374096 other upstream 1338471 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 1338471 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 1338471 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 2723504 1232022 ~ 1233118 (+) True G328456
TU375960 other downstream 1126853 5084720 ~ 5096971 (+) True G330755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052163 True 592 mRNA 0.51 2 NC_007114.7 55401951 ~ 55404985 (-)