RNA id: CI01000112_04036511_04048219.mRNA



Basic Information


Item Value
RNA id CI01000112_04036511_04048219.mRNA
length 4004
RNA type mRNA
GC content 0.41
exon number 20
gene id CI01000112_04036511_04048219
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 4036511 ~ 4048332 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAGAATCGCATCTCCGGTGGAGATGCAGTGATGAAGGTTGAGCAGAGTGAGAAGCAGCAGTCTGCTCTTTCTGACCAGAAGAAAACAGAATCTGAGAAACACGATGAAAGTGGGGAAACAGAAACCAATAAAGGCGTTCAGCATGTTTCATCTCCTAAAACCAAAAAAAATCAGAAGGATGAACCACAGAAATCATCACAGGAAATAGTATTTGGCCCACAGAGCAAATCCAAGAAGAATCATGGTTCCAGTGGAGATTCAGCGGTAAAGGTTGAGCAGAGTGAGAAGCAGCAGTCTGCTCATGGAAAGAAAGATTCTGCTGCAGACCAGAAAGCCAAAGAAAGTGGTGATATAGAAAGTCAGTGTGTTGTGCTCCCAAAAAGAAATCCAGCATCAACTCAACATATAAGTTCCAGAGACAAACTCACCATTTACTTTCATGCAGTCCTGTCGAAAGACTTCAAGTTTAACCCAGACGAGGATTATATTTTTGTAAGGGCTGGTAGTCACATTGGTAACTGGGAAAAAGATCTTGTCGAACTGTCTGTGTCACGGAATCTCGGAGAGCATGGATTTCTTGTTGAAGGGAAGTTTGTTTGCAAAAAAACTGATGCTGAATCTGTGTCCATCCCCTACAAGTATGTTGTATATAAAGCAAAAAAAAAGCAGAAGTTTGAGTTACATTATGAATACATCTACAAACTGGATTCGAATGAAACCACCAACAGATGTCTGTTTGTCAAATCACATCTCCTAAATGATGAAGGGGAATGGCATCAGTATGATGATATCATCTGTGCAGAACCATCTAATAATATGTTTGAATGGTTCAAAAAAGCTGTTTGGCCTGATCAAAAGAAAAGTGTACTCCAGGGAAGAAAAATCGCTGGTACATTCATGCTGGAAAGTATCTTTGACCTCCTGACAAGCTGGAGCAAAATTAACCTCAGGAACTTCTTTAGTCAACTCCGACAGTTTTTTGAGATCTATGGAAACCCTTATGTATATGAAAAGAAACAGATGCAATGGTCCCAACTCGATTACAGTGAAAAAGATGTGAGCAAGCTTCTGAAGCAGTTCATGCTGGAGCGGGTGACTCCAGAGCTACAGAAGGACAGTGAGGGAAAGAGTGCTTTCATCAAGGAGCCACTAAAGTCTGGTCTCATTATGCTTTATGTCTGGAAACAGTATCGTCTAGAATTAGACAATGCAAATCTTTCTCGTCTCTGCACTGCCCTCTGCCTGCCAAAATTACCCAAGGATGAATTCCTGTCTTTCTGGACTGACATAACAGAATCATTCTCAGAAATAAAAAACTTGTCTGACATGGTGGAGGTGCTGATCAACAGAGTGAGAGCCGAGGAAATTACCAAATGGATCATTGTAATTCCACTTCTGCACCTTTTCAAAGGCACTTCAAAACCATTTGAGCCAGTGTTTATTAAGGTCAACTCAAAATCTGAGCAGAGCTGGGCTGGACTGCAGGGACTCAAATCAGACACTGTATCTTACCTCAGAACCCAAGAAAGAAGGGCGATGTTGAATCTCATGAAGGCAAATGGACATTTGGCTGAAATAGACAGACTGCTGGCCCGGTCTTGGATGTATCTGATGACTGTAGAGGAGTTGGTCGAGTGCAGCTCCATCATCCATGTTGAGCTTCTGGACATCCTGCAGCTTTTCACCATGAAATGCCCCAATGATATAAACTACAGCACTTCCACAGCTTATGGCATTCAGTGCATACAAGCAACTTGCAAACTCCTAGAGAAGATCTGCAATCTAGTTCATTACTACAGCTATGGACAAAATTTCACTGATATTCCTGTTGCTTGCATGAACCTTGTGGCCTCTGTGTCAGGATTTGCCCAGACAACACAAGAAGCAGACACTTTTTCTGAGAAGACACTTGCATTACTCAGTGATGCCAAGCGGACTGTGAGAGCATGGATCAGACAAAGTTTTAAAGGCAGGCTTTTAAACAGAAGTTATGTAACGGGTACCAACTTCACTACAGAGGTTGAGATTTGGAATAACATTATTGCCATAGATTTCATGAGTAAGGATTTCACTAAAGAATGGAGAGAGACATTTACAATGGACTTTGAGGGGAAATATCAACAGGAAGATCAGCTGGATCAAATCGAGATTTATTGCTCAAAGATTAATGAACTTAACAACTCCCAGCCTTTTTTGGTGGGTAGCGTAGAAAAGTGTGCTCTCCAGGCTGTTACCACAATATGCCAGAATAAATCTGAGGGGAAACTTTTTGAGAGATTAAATGAATACCGAATAAACTGGAAATTTGGAAAGCTTGTGTCTACCATCATCCTAAAGTCCTGGCCAAGAAATGATGAAGGAGCCTATCTTGAGGAAGAAGTTATTCTCAAACATCTTCTGGGGTGGACAGCAGCCAAAAATATCTTTCAGCTTCATGGTGCTGATGAAAAACTGATCGAACAGCTTTCTGAAGAAGCTAGAGAGAAATTAGCCATGGCAACATCATTATTCACAAACATTTTAAATCAACTTGTAACAGGGAAAATAAAGATAAAGCTACTCAATCTCATCCTGCAGAAGAGGAGTGCATTCTTTGAGCTGCTTAATTTAGAGTGTTTCCAGAGTTGTGAAAATGAACAATACAAGGACACCAATGCAATGAAGAGGCTTCTTCAGTCTAGACAGGAGGAGGTGAAAGCTATCAATCATGAAAGCGCATTGGTGGATGCTCTCATTACAATGTGCCGCAGTCTAGAGGAGCATGTGATGGTTGATTTTGACGGGTTGGAAGAAAAACACCATATTAACATTGATGAGATGGACCTGGACGAGTTCATGGACGTTCATTCATTAAATCAAATTCCCTCTCCAGTGTCAAGAGTAGTCACCTACTTTGAGCTTGATGATGATGTTCGATCTATGGCAGAGGTCCTAAATATCTATAAAGACAGCTACATTTTCAAATCGTGTTGGGTGAATGAGGCAAAAGACTTTGCAGAGAGTGCCAATGAGGAGGAATTGGATATCACACTCGAAGATCTTAACAGAGAAATATTCGAACAATGTTATGATACCTACAGAAACATATACACTAGGCTGAAAGATGGTAGCATAACTTTTGATGAGGTTGATGTGACATTCAAAGCCTACAAGGGGAGATATGAAGAACTGGCAGCAGAAGTTGCAATCATGTGCAAACTGGACCTCAGTGATAACCAGCGCTGGATCCAGACAAGAATCCAGCAGATCGAGCAGTACCATGAGCTTCATCTGGCAGTAGAGTCAGCTCAGGTGGTCATGATGGTCAAAGAGACGCTTCACTTACAAGGAGACTTTCAAGTCTTGGAGAAGTTGCTTGTTACTACACAGTTGGATTTTAAACGGGAGCGTCTTGACAGCATTGACAATGAGTTGATGCAGGCAAAAACTGTGCTTGTGGACATCACAGAGTCCCGTAGACTGTGCCTTCAGGAGCTTGGCCTAAGGAAGAATTTCGTTATGTGGGTTAAAGAGGCTCTTGAAGACATCAATGAGTTGAAAGTCTTTGTGGACTTGGCTTCCATCTCTGCCGGAGAGAATGATTTGGATGTGGATCGTGTGGCCTGTTTTCATGATGCAGTTCTTGGCTACTCCTCAATGCTCTATGATTTAAAGCCAGATGCTGACTTCAGACTTTTTAAAGATATGCTGAAAAAACTATGGAAAGCACTTGACAATGACCCCAACCTCCCCAAAAAATTGTGTGACTCTGCAAGACACATAGAATGGTTGAAGACAGTCAAGGACAGCCATGGGTCAGTTGAACTGTCCTCTCTATCTCTGGCATCAGCTATCAACACAAATGGCATTTACATTATCAGTGCACAAAATCAAAAGAAGGTTTGTCACTAATGTTTTTTTGTTTTTTTGTTTGTTTGTTTTTAATTAGAGCAAGACAATATAAGATGTACAGGGAAACATAGTACAAAATACAGAATTAATAGTGCAGTAGAAATAATTTGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU374549 lncRNA upstream 62628 3972116 ~ 3973883 (+) True G329512
TU374550 lncRNA upstream 110335 3859478 ~ 3926176 (+) True G329513
TU374554 lncRNA upstream 153567 3811534 ~ 3882944 (+) True G329517
TU374445 lncRNA upstream 493485 3533229 ~ 3543026 (+) True G329413
TU374409 lncRNA upstream 648060 3388250 ~ 3388451 (+) True G329381
TU375547 lncRNA downstream 55906 4104238 ~ 4104501 (+) True G330383
TU375567 lncRNA downstream 100187 4148519 ~ 4148864 (+) True G330402
TU375569 lncRNA downstream 101655 4149987 ~ 4150244 (+) True G330404
TU375561 lncRNA downstream 107067 4155399 ~ 4157165 (+) True G330396
TU375604 lncRNA downstream 146334 4194666 ~ 4194913 (+) True G330433
CI01000112_04033996_04035285.mRNA mRNA upstream 1174 4033893 ~ 4035337 (+) True CI01000112_04033996_04035285
CI01000112_04020422_04027554.mRNA mRNA upstream 8765 4020284 ~ 4027746 (+) True CI01000112_04020422_04027554
CI01000112_04004799_04012301.mRNA mRNA upstream 23831 4004575 ~ 4012680 (+) True CI01000112_04004799_04012301
CI01000112_03978196_03991078.mRNA mRNA upstream 45433 3978196 ~ 3991078 (+) True CI01000112_03978196_03991078
CI01000112_03956622_03957718.mRNA mRNA upstream 78644 3956622 ~ 3957867 (+) True CI01000112_03956622_03957718
CI01000112_04050993_04055507.mRNA mRNA downstream 2661 4050993 ~ 4055507 (+) True CI01000112_04050993_04055507
CI01000112_04055598_04089942.mRNA mRNA downstream 7266 4055598 ~ 4090536 (+) True CI01000112_04055598_04089942
CI01000112_04264297_04265684.mRNA mRNA downstream 215381 4263713 ~ 4265972 (+) True CI01000112_04264297_04265684
CI01000112_04346478_04353682.mRNA mRNA downstream 297371 4345703 ~ 4354299 (+) True CI01000112_04346478_04353682
CI01000112_04561557_04563086.mRNA mRNA downstream 513123 4561455 ~ 4563190 (+) True CI01000112_04561557_04563086
TU374184 other upstream 1104622 2920254 ~ 2931889 (+) True G329194
TU374096 other upstream 1418360 2617704 ~ 2618151 (+) False G329125
TU374097 other upstream 1418360 2617704 ~ 2618151 (+) False G329125
TU374098 other upstream 1418360 2617704 ~ 2618151 (+) True G329125
TU373329 other upstream 2803393 1232022 ~ 1233118 (+) True G328456
TU375960 other downstream 1036388 5084720 ~ 5096971 (+) True G330755

Expression Profile