RNA id: TCONS_00000150


Basic Information

Item Value
RNA id TCONS_00000150
length 3890
RNA type mRNA
GC content 0.50
exon number 28
gene id XLOC_000079
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6817292 ~ 6925407 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTCCTGGCACTGATAACAAGCTCAGCACGCTGTCGGATTTGGACCAGCAGTACAAAACTCTTCGTAAGTTCTACGAGAACTGTGAGGTGGTCATGGGTAATCTGGAGATCACCAGTATTGAGAGAAACCGCAACTTGTCTTTCCTCAAGTCTATCCGGGAGGTGACGGGTTACGTGTTGGTGGCTCTGAACCAGTTTGACTATCTTCCTCTGGAGAACCTGCGAATCATCCGAGGCACTAAACTATATGAAGGACGCTACTCTCTGGCCATCTTTCTCAACTACAGACGAGACGGCTACTTCGGCCTGAGACAGCTCGGCCTCAAGAACCTGACAGAAATCCTGAACGGAGGTGTGTATGTGGATCAGAATAAGTTCTTATGTCATGCTGACACCATTCATTGGCACGACATCATCAAAAACCCTCGATCTGAACTTCTGGTGGTTCCGTCAAACAACAGCGGCAACACATGTAAACGGTGTCACAGATCTTGTAATGGACGGTGCTGGGGTCACCAAGAAGATCAGTGTCAAAGCTTGACGAAGACGGTGTGTGCGGAGCAGTGTGACGGTCGCTGTTTTGGGCCATATGTCAGTAACTGCTGTCATCGTGAATGTGCAGGAGGCTGTTTCGGACCCAAAGACACCGACTGCTTCGCTTGCACCAACTTTAATGACAGTGGCGCCTGCGTGACTCAATGTCCTCAACCATTCGTCTACAATCCAACGACCTTCCAGCTCGAGCACAATCCCAATGCCAAATACACCTATGGAGCTTTCTGTGTCAAGAAATGCCCGCATAATTTTGTTGTGGACCACAGCTCTTGTGTCAGAGCCTGTCCGAGCAACAAGATGGAGGTGGAGGAAAATCAGACCAAGATGTGCATCCCCTGCACTGACATCTGCCCGAAAGTGTGTGATGGAATAGGAACCGGCAGTCTTCAAATGGCTCAAACAGTCGATTCCAGTAACATTGAGAAGTTTGTCAACTGCACCAAGATTAATGGCAACCTAATCTTCCTTATTACAGGCATCAAAGGGGACATGTTTCATGGAATCCGAGCTCTGGATCCTGATCGGTTAAATGTTTTCCGCACCGTCAGAGAGATCACAGGTTTCTTGAATGTTCAGTCTTGGCCGGAGAACATGACGGATCTTGGCGTTTTCTCAAACCTTGCCACCATTGGAGGACGGTCTCTTTACAGTGGTATTTCTCTGCTGATCCTAAAGCAGCGCTGGATCACATCTCTGCAGTTTCAGTCTCTGAGAGAGATCAGCGCCGGTAACGTCTACATGACCAACAACAGCCAGCTCTGCTTCTACAGCACAGTCAACTGGACATCTCTGTTTCGCACCAGCACCCAGCGAGCCCTGATCAAAAACAACAGAGAGCCCAGAGAGTGCTCTAAAGAGCAGAAGATATGTGATCCACTGTGTTCAGAGGCTGGATGTTGGGGTCCTGGTCCAGACCAGTGTCTGTCCTGCAAATACTTCAGCCGAGGAAAAACTTGTGTCAAGTCCTGTAACTTGTATTACGGTGATGTTCGAGAGTTCGCCAACGGCTCGGTGTGTGTGGAGTGTGACAGCCAGTGTGAAAAAGCTGGAGAGAAAGGTTTAACCTGCCATGGCCCGGGTCCAGATCACTGTGTGAAGTGTCTGCATCTCAAAGACGGGCCCAACTGTGTGGAGAAATGCCCTGACGGTCTGCAGGGAGCAAACAGCTTTATCTTCAAATATGCTGAGACCAACAACGAGTGCCATCCCTGCCACCCCAACTGCACCCAAGGATCAGTGGCTTGCAACCGGTTTCGCTGCAGGACCCGCATTTTGTATCGGACATCGTGTGACAATCCAATGCAGAGCTACAATTGCTCACTGGACAGAAATATGTTTGATGCAATGTTTCTTAATGTTACATACTGTACTGGACCCCGGATACAAGACTGTGTTGGCATCTTGGACAGGACTCCTCTGATTGCTGCTGGATTAATTGGGGGTCTCTTTGTAATAGTCATCATAGCTCTCGGTGTGGCTGTTTACATCCGCCGAAAGAGCATCAAGAAAAAAAGAGCCTTACGTCGATTCCTGGAAACCGAGTTGGTGGAGCCCTTGACGCCCAGCGGTGCAGCACCAAACCAGGCTCAGCTGCGCATCTTGAAGGAAACGGAACTCAAGAGGGTCAAGATTCTGGGAGCTGGAGCCTTTGGCATGGTCTATAAGGGAATCTGGGTTCCAGAAGGGGAAACAGTGAAGATTCCTGTGGCCATAAAGATACTCAATGAAAGCACTGGACCAAAAGCCAATGTGGAGTTCATGGATGAGGCGCTGATCATGGCCAGTATGGAGCATCCTCATCTGGTGCGTCTTTTAGGGGTCTGCTTGAGTCCCACTATTCAGCTGGTCACTCAGCTCATGCCCCACGGCTGCCTGCTGGACTACGTTCATGAACACCAGGACAACATCGGCTCACAGCTGCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGTATGATGTATCTGGAGGAGAGACGGCTGGTGCACAGGGATCTTGCAGCTCGTAACGTTCTGGTTAAATCTCCAAACCACATTAAGATCACTGACTTTGGCCTCGCTCGACTGCTGGACACTGATGAAAAGGAGTACAATTCAGATGGAGGGAAGATGCCTATCAAGTGGATGGCACTGGAGTGCATTcattacagaaagttcacacatcaGAGTGATGTATGGAGTTACGGAGTGACTATCTGGGAGCTGATGACGTTTGGAGGAAAGCCTTACGACGGGATTCCCACACGGGACATTCCAGACATCCTGGAGAAAGGCGAACGTTTGCCTCAGCCGCCCATCTGCACCATTGACGTCTACATGGTCATGGTTAAATGCTGGATGATTGATGCTGATAGTCGTCCACGTTTTAAAGAACTCGCTGCAGAGTTCAGCCGTATGGCACGAGACCCGCAGAGATACCTCGTCATACAGGGCGATGATAGGATGAAGCTGCCCAGCCCAAACCACAGCACATTCTTTAAGAGTCTTCTAGATGAGGAGGAGCTGGATGACCTGATGGATGCTGATGAGTACCTGGTTCCTCAGACCTGCAATATCTCTACCTCTACTTACACGTCACGCACAACAATGGATGCCAGCTGGACTCTGAGGTGTCGTGACAGGGTTTTCAGTCCTGAAGACGGGATGGGGGCTTGTTCTCGTGATGTTCCTGCTTCAGcgagtgctgtgtttgttcctgtgaGCACTCAAGCTGCGGGACTGAACGTTCTAGAGGAACAGCACTGTAACGGGAGCCTGAAGAAGCAGCAGCCCATGTCAGGATCAGGGGATGACTGCGATGGCCAGCGCTACAGTGCAGACCCGACCGTCTTTCTCGGCGAGAGGAGTCTGAAAAACACAGACGAAGATGGATACATGAGCCCTATGAACAAGTCAACCTCAGACCATCTCAGTCCTGTCGAGGAGAATCCTTTCGTAAACCATCGGAAAAATGGAAACATTACTGCACTGGACAACCCGGGTTACCACAGCACACCTGACAAAAAATCCAAAGCCGAAGAAGACGAATACATCAACGAACCCCTTTACCTCAACGCATACAACACCACCGGACACACTGGGACTGTAATGGCTGATAGGAAGTCCAAGAAGAATTTCGATAATCCTGATTATTGGCAGCACAGTTTGCCTCCAAAGGTGACCCAAGCGAACCCTCAAGACCCAACGCAGACGTGCAAAAGCAAACACCTGTACAGACACAGCATTCGGAGTCGTTTGGCCGTGGCTGATAACCCGGAGTTCGTATCGGAGTTTAATAAGAGACCAGGACCGGTTCTGCCACCTCCGCCATACCGGCACAGGAATACGGTTGTGTAA

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016310 phosphorylation biological_process
GO:0048699 generation of neurons biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0005154 epidermal growth factor receptor binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030918-4 Predicted to enable epidermal growth factor receptor binding activity and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within generation of neurons. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Orthologous to human ERBB4 (erb-b2 receptor tyrosine kinase 4).

Ensembl:

ensembl_id ENSDART00000145822

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003024 lncRNA upstream 56362 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000148 lncRNA upstream 148953 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003022 lncRNA upstream 262822 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA upstream 414069 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000137 lncRNA upstream 620529 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000153 lncRNA downstream 31810 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000155 lncRNA downstream 167170 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000156 lncRNA downstream 167170 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00003025 lncRNA downstream 587426 7512529 ~ 7512762 (+) True XLOC_000084
TCONS_00000159 lncRNA downstream 592346 7517449 ~ 7523930 (+) False XLOC_000085
TCONS_00000146 mRNA upstream 153169 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000145 mRNA upstream 154366 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000147 mRNA upstream 154471 6646616 ~ 6662821 (+) True XLOC_000075
TCONS_00000144 mRNA upstream 170936 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000143 mRNA upstream 451226 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000157 mRNA downstream 264753 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000158 mRNA downstream 489215 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000160 mRNA downstream 592351 7517454 ~ 7539716 (+) False XLOC_000085
TCONS_00000163 mRNA downstream 613806 7538909 ~ 7550654 (+) False XLOC_000085
TCONS_00000164 mRNA downstream 615875 7540978 ~ 7550899 (+) False XLOC_000085
TCONS_00000149 other upstream 29488 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 631760 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 1315208 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 1330130 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 1366848 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000154 other downstream 138734 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2228991 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2229890 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2293545 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 3126671 10051774 ~ 10054771 (+) False XLOC_000126

Expression Profile

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