RNA id: TCONS_00003023


Basic Information

Item Value
RNA id TCONS_00003023
length 4720
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_000073
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6398210 ~ 6403223 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACCATTTATTACACATAATGACATTCTTAAATAAAAATGCTTCACTTAACAGTTCTTGCATAGATATATTACAATAccaatttaaaaaagaattatgaAACAAACCGGTAACAAAAATAAACTCTTTTCCTTTTTCCTTAATAAAGAACATTGTCATACTAACAtcatataatacaaataatatatgcAAACACTTTTTACAGCAAATAAAacgaaaaataaacaaatcaaaaaacaGCATAAATATAGGAGCAAAGTGGAAAGCATGAAATGCCCGCGAAAAGCAGAGGAATCGGATTTATCTTACAGCAGGAAGTGTGGAAAAAAAGCCTTTAACCGGAAAACTACGCTACGAGTGCAACAGACATTAGAAATCACTCTGTTTATCAGCTTCGTACAATCCATTTTAAAGCTTTTAGCACAGCGTTTTGAGCAATGGAAGagtacaaaaaacaaaacgaTGCTTCGAATGGGAGCGAACGGACGCCAGCTGCTAACGTAAATGTACTAATGCATCAATCCAAAAACAACGCACGGACCTAAAACAGACTAATCAGAGTTTCACAAGATATGAAATGCATTCAAACTCCTAATATAGTGTTTCCCTGCATGTTTAGTAGTGTCTCTGCTCGTGTCGGATTTGTTAATTGTACaccaaatgtaaaaatgtacCTGCAAGTGTGCATCGTAATTACAAATAATTGCATTATCCCACAGCAGAAAGGTCAGTAAGTTGTCGATTTTAAAAGCGGCGAACGCACACGCTTTATACACACTTGAGGGATGCTAAAAGACAGTGCACATAAAAATAGTAGACGACGAGCTTCTCTGCGGGGCTTCTGGAGTCCATTAAGACAAACACATTAGCTGGTTTTGACCAAGGTAACGTCCCTAATTGGTCCTGCTGGAGGATGTTAAAGAAGGATTTTTAGGAAAAAGGTGCACTTAAATTGAACAAATGGTCAAGTCCATGAGGGAAACTGTTAGAGAGCGTCGTATGTCATGATTCGTGGATTGCAATAACTTGACGAGCTCTAAGAGAATTTGAGCACAAGCACAAAAGTTTTGTATTCAGGTGCACTGCAGATCCTCACAAAACATGATGGTCAAAAAATGGCCAGGACATATCACACCCTAAAACTGGATATATTAGTCAATTAAAACTACAATTGTGACATTTATATTGCAATTAGTAACAGTTAAACAGGTTTTAGTTAGATATGGATGCTTGTTCCTGCTATatgttgataataatattaataaaaacagtccCAAGTTCATGTTTTAGACcgaaaaatatacattaaatttactacatttttaaaggtaagtggttcCAAACAACTGATTTAGGctgaattttaacaaaaaattgaacgttactacatttaaatttgtttaaattcagtccatatgaactttttgcaaccacttaccttaaaaagatGTAGTAAACGCAATTGTTTTCACTTCTAGTTTTTGAGATGAAATGTGATCCGAGCATATTCTTGCCATGTTTTGTGATATTCACTCATAACCTGTTTCTCGTATGTTTTATCCATCTAGGAGCATCACAGGAGCCCCTAAAATAAACACTTTCAATGAGCATCACCAGGCTTGATCACCTGTGttacctgcactgtaaaaaaatctgttatttataaaaacgtaaattaacggcagttaaattacagtaacttaACATGAAATTTAACGTAAAATACGTAATCATAAAATAACgtcagttaaattacagaaatttaatgtaaaataacagacggtaaattacagaaatttaacgtAAAATAtgtgaacataaaataatgactgttaaatgatagaaatttaccgtaaaataacagacagtaaattacagaaatttttcatgaaattttatgtaaaatatgtaaacataaaataacggccattaaattacagacatttaccgtaaaataacagatgataaattacagaattttttcatgaaatttaatgtaaaatatgtaaacataaaataacggccattaaattacagaaatttaccgtaaaataacagacggtaaattacaattttttttttcatgaaattcaatgtaaaatatgtaaacataaaataacggccatttaattacagaaatataccgtaaaataacagatggtaaattacagaaatttttcatacaattttaatgtaaaatatgtaaaatacgcaaacataaaataacggctgttaaattacagtaatttaccataaaattaaatatatcgtaaaattttaatttaagaaaatttctgcaatttaacatctgttattttaacGGTAaacgtctgtaatttaacagccgttattttacatttattttctggCATCTTAGctgatggaaaaaaaataaataacagattttttttacagtgtagtgttggTTGTTTATGGAAATATTGGATTGTTTTTCCCAAAAATGTGGGACAGCATGATGCATATTATTGTTTGCATATCCCACGATCATGTTCTGATATAAATTTTGAACTACAAATTTTTACGGTATGTTGTAAACCTCCAGGTTGCAGTCTTAAAGGGCTGGTTCACCACAAATGGGAATTTCTCTCATTATTTTTTCACCCCCAACTTGTTTGCCCCAACCTATTCGAGTTTCCTCCttttgttgatcacaaaagaagatatttcgaaaaatgATGTAGCCATTGAtttttatagtaggttattttcCCTATTATGAGTGTCAGTTAGTTTCCATTCAATGATGTGGATTTAATCTATGTGCAAATTTGAAATATCGCATAAAACATATGCGAATGAAGCACCGTTTCCATCCAAAATGGtaacttcctgataaactgatggcaaatagcaaagagaaaatcTGAATTTTCTGCATTATTTTAGCCAATGTGAACTTTTTTCTTATGACACAGTAAGGGCCGGTGTCACAGACAAGGCTTAGTCTAAACCAGGATTAGATTTTAGTTCaattaagatttttaaataactttaataaacGTACACTACAAAAAACATTACTGTTTTGTATCTTGAGACAAAACAATAGTACTGACACATTTTGAGGTATACCAGTACAACTTGCTTTGTTACAATATCTCATACATGCATTTAACTCTAGGACTAGATTAAGCCTTGGGGTTATACTGGGGGTATATGTGCCTTAGAAAacgataaagtaaaaaaaataaacatgcgttgaTTATTCGAGTCGTGAGACGGACTTTGGGAAGCTCTTGGAGGTAATACTAGTGTACCACTTTGATGATGGGCTTTAGCTGAGggatattaaaattacaaaaacaacattttagatattttacaatgtgctcTGTCAACTAGTTTGTCCATTAATGACTATTTTTGTCATTGCAAGatctattaaaacaaaatcacatgacttttttgatgcGCATGCTCtagaatttattcagtaaatgtgtttccattctACCCTTTGCACCTTTATGtgttatcgaataaaaagtttatcctactcagtttttatgcacatttttaaaaatgtatgcatatCCTGGCATTTATATTAAGCATTTTTATGACACATTTCAAAATTAGATGTATGGTAACAAGGCTAATTGCTattgttcttcaaaatatcttcatttgtgatcgacagaaaaaaaaaactcaaaggtttgaaaccacttgagggtgagtaaatgatgcattaaattaaatttttcggtgaaccatctctttaaatCTCTAAGAAAAGCAAGCTTCGTGCACTAGATTTTAGCTTGAAATGGTCTGTGCGACGGTCTCTTGAGGACAGGGGATGCGCGCGGCTCTGCTCTGGATTCCTGTGACCTTGTGTCTTTGTTATTTTTCATGGAGCTAATGTGGCCAGGGAGGGAAGTAAGCCGACACCCGGCTACACGGTCAAATTGACTGTGTCGGGCAGTTGCGATAAGATCTCCCGGTCAGCATAAGTGTGGAGTATGACCCCCAGTGTGGTCCTACTCCGTTACGCCCCATTGAGGGGGTGACCAGTGCCTGGAGAGCCGAATTCCATTCTCATTACCCATACTGCCATTCTGACAGACAAGGCCTCCCGTTGGTTCATGTCAGACAAGTGAGTGAAAAGGACAAGGAACTGACTGACAGTGTGAACAAGTCATAACAATCCTTGTCTAACACTTATTTCTGGATGAAAGGAGTAAAATCTGGAGATGTGGTTATAAAATGTCATAGAAAGAGATGATTTTTGCTGACTTGAATGTGTTAATATGTCAGATATGAACTGGAAATCTTGACAAAGTCTGATTTATGAGATATAAGCCAAACATTTTTGGAGTTATGAACTTGATTTTGGAGATTGTGAAACGATAAAACATGTGTATGTCATttaaattacatatatttttccatttttaagCATCTATTTTAGGGGTTTAGAtgtaaaatgcatatttatacaCTATGGATAGTTTGCATTGGTTAAGGATTAATAAATCAAATCTAGGTGTGCTGTGCtcattttatagatttttagaTCTGGGGCTCTGATCTGGGgctctaatagacatcttttaaaaacaaaaaaatgcttgctgagtTACACCACAATACACAAGACTGCTATAACAGGATCATATGAACAGTTATTCATCTTCATGTCATGTCCAAACCTCCTACACAATGCCATAAGACGTTAataccaaaattcaatgtc

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0044297 cell body cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0150034 distal axon cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000137 lncRNA upstream 201447 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000135 lncRNA upstream 212678 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000133 lncRNA upstream 218654 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000131 lncRNA upstream 220873 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000128 lncRNA upstream 231656 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000148 lncRNA downstream 261810 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 355960 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000153 lncRNA downstream 553690 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000155 lncRNA downstream 689050 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000156 lncRNA downstream 689050 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00000143 mRNA upstream 32144 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000142 mRNA upstream 68918 6307305 ~ 6329292 (+) True XLOC_000070
TCONS_00000141 mRNA upstream 126064 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000140 mRNA upstream 154232 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000139 mRNA upstream 157692 6225493 ~ 6240518 (+) False XLOC_000069
TCONS_00000144 mRNA downstream 237214 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000145 mRNA downstream 243306 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000146 mRNA downstream 243349 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000147 mRNA downstream 243393 6646616 ~ 6662821 (+) True XLOC_000075
TCONS_00000150 mRNA downstream 414069 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000134 other upstream 212678 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 896126 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 911048 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 947766 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 979703 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000149 other downstream 384467 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 660614 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2750871 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2751770 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2815425 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU467571 True 1165 lncRNA 0.35 1 CI01000299 3334043 ~ 3335207 (-)
eurasian perch (Perca fluviatilis) TU143545 True 653 lncRNA 0.50 2 NC_053121.1 21490056 ~ 21490821 (-)
mexican tetra (Astyanax mexicanus) TU143545 True 1418 lncRNA 0.38 2 NC_035908.1 25558581 ~ 25560028 (+)