RNA id: TCONS_00000135


Basic Information

Item Value
RNA id TCONS_00000135
length 561
lncRNA type sense_over
GC content 0.39
exon number 3
gene id XLOC_000067
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6161930 ~ 6185532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGACCTATAATAACCTGAGCATGAGCATGCAGGAGGCGGTGCGCAGGAGACGCTGCTATGTGGAAGGAGTCATTAAATGTTACCCTGACGAGACTTTAGAGACTGTTATTGACAGAATAGTCAAGGCAGAGgtccATAGGCTGGTGCTTGTGGACAGAGAAGACGTGGTTCGGGGAATAATCTCTCTGTCAGACCTGCTGCAGGCCATAGTTTTATCCCCAGCAGGTTTGTAAAAGTGGATGAAATATGACTGCCAGCGAGATTAAAGGAaggatctcttttttttttttttgtacacaatTACATTGTAAAATTCATGGATTATGTAGAGTGTGTAATATATTAATCAACAAATTtctcatttaaatgagagatgcTTTATTATGATAAAGTACTGACGAaaccttgctttgttttaatGTATGGGCGAGCACACACGGGCTGAGATTTTGATCAAATTGATCATGGAGTTTCCTCTTTGTGCTATCTTATGAAATGTACAGTCAgataatcatgttttttttttaataaactgttcCTCGTgctctttttttgtttg

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000133 lncRNA upstream 2788 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000131 lncRNA upstream 5007 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000128 lncRNA upstream 15790 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00003020 lncRNA upstream 383252 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA upstream 383252 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00000137 lncRNA downstream 4465 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00003022 lncRNA downstream 194346 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA downstream 212678 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000148 lncRNA downstream 479501 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003024 lncRNA downstream 573651 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000129 mRNA upstream 10016 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000127 mRNA upstream 12527 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000125 mRNA upstream 23735 6135176 ~ 6158609 (+) False XLOC_000066
TCONS_00000126 mRNA upstream 23735 6135188 ~ 6158609 (+) True XLOC_000066
TCONS_00000124 mRNA upstream 594769 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000136 mRNA downstream 4417 6189949 ~ 6210718 (+) False XLOC_000068
TCONS_00000138 mRNA downstream 21418 6206950 ~ 6210718 (+) True XLOC_000068
TCONS_00000139 mRNA downstream 39961 6225493 ~ 6240518 (+) False XLOC_000069
TCONS_00000140 mRNA downstream 40603 6226135 ~ 6243978 (+) False XLOC_000069
TCONS_00000141 mRNA downstream 58374 6243906 ~ 6272146 (+) True XLOC_000069
TCONS_00000123 other upstream 680260 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 695182 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 731900 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 763837 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 2422310 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000149 other downstream 602158 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 878305 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2968562 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2969461 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 3033116 9218648 ~ 9221616 (+) True XLOC_000115

Expression Profile

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