RNA id: TCONS_00019151


Basic Information

Item Value
RNA id TCONS_00019151
length 1471
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_009186
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21493852 ~ 21507536 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTAACCAGCTGTGCCCGGCTGGAACACCAGGGCAAAATCAGTCAATGAGCAGGAATGCAGAACATCTGGCATTGCACCACATTCCACTGAATTCCCTCagtcatttttgagaaaaacctGAAGgcATCCTTGGACTATAACTCACGTTCTTGGCCTTGGTGTTGTACCCATTCCTGGCACACCATAAAAAAAATCGTTTTACAATATCTGTTGTGAAAAGCCGCACCTTGataaaatgtaattgaatttAGTTTGTCCTTGGTCTTCTGCGACTTTActgaaataaagaaatgaattcaTAGCATGGCGTGAAGGACATAAGACATTCAATATGCAAGTATACTTTCAGCGCAATTGCAAAGTGTCTCATCGGCCAACCTTGTGACGGCAAGGAATATTTGATTTGAATTGGGACTCCCTCGAAATACTGGAATCATGgcttttaatagatttaaaaagaGTTGCTCATCAATTATGCAGCATCTCCTGCCTTTAAGATGAGACGGCAAAGATAGCTTAAGGAAAATGAGAGACTTTTCAGAGCTGGATTCTGTGCCTGTGTTAACAAAATAAACTCCATACGTCTTTTCTTTAACGTGAACGCGCGGAACTGCGTGCGCTAGAGAGTCTGCGAGGGGCCAGGTGTTGCTAGATTCGGCTTCTCAATGTCACCGGTGATGTGGAAGGACAAAGGCAGTATTGAGAGCCCAGTCAGAGGCCTGGGAGGAGCGGGATAGTTTTACAGAAAAGCCTCTGTTTGTGCCAAGCCTGCACCCGTACACAACAGACACTGTGTTCTGCTGCTCCGCTCCCAGCTTTGTCCTTGCGCTCTGCCTCTCTCTTCCCCCCTCTTTTCTCCTTGTTTCGAACAGGTAGCAATGGTGCTCGCATCTAGGCCACAGATCGGAGAGACAGATAGCTGACTGTTAAGAACACAGTTTGGCATTCTAGACTCGGGCTCTTAACGTCCCACACAAAGACCTGGAGCCGGACGGAAACATGATAAAGGTGCGCGCCATCTCGCTTGCTAAGCACACCGAGCAGTGACGCCCCCCACCTCAGACTACTGGGAAGTCTCGCTCCAACGGACATCTGTCTGTGGTCTTTTACCTGCTGGGAATGGAAGACCTTTGAAAGGAAATCTAAACTTAATCATTCCTAAAACATGTGAAAAACTTCTGAAATATGTCAAATGCATGGTTTTGGAACATTTTTCAGCGAGACCAATGTGATCACATCAAcacgtccatattttttacatgagACTTTGAGAATAAAATGTTTCCAGCTTGTTTAAATATGGTTTTACATGTAAAGCTTAAGTGGTTTTCAGTAGGAAATGAAATGATGAGATTGGAACGGCTAGATTAAACCAACTCAAACCAAAAAAAAGCTgcacaaaaatgacatttctatATATTTCCTGGTTTTAAATTAAAGTAGAAAGGAAACCTGTTTTACTGATATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019150 lncRNA downstream 124291 21364961 ~ 21369561 (-) False XLOC_009185
TCONS_00019146 lncRNA downstream 124350 21355581 ~ 21369502 (-) False XLOC_009185
TCONS_00019148 lncRNA downstream 124350 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019147 lncRNA downstream 124350 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019149 lncRNA downstream 124358 21364961 ~ 21369494 (-) False XLOC_009185
TCONS_00018083 lncRNA upstream 297578 21805114 ~ 21813448 (-) True XLOC_009192
TCONS_00018093 lncRNA upstream 392770 21900306 ~ 21904226 (-) True XLOC_009195
TCONS_00019152 lncRNA upstream 653389 22160925 ~ 22161978 (-) True XLOC_009198
TCONS_00019153 lncRNA upstream 1080968 22588504 ~ 22594885 (-) True XLOC_009202
TCONS_00019154 lncRNA upstream 1637418 23144954 ~ 23154260 (-) False XLOC_009205
TCONS_00018075 mRNA downstream 254436 21220744 ~ 21239416 (-) True XLOC_009184
TCONS_00018074 mRNA downstream 328615 21157585 ~ 21165237 (-) True XLOC_009183
TCONS_00018072 mRNA downstream 338195 21137046 ~ 21155657 (-) False XLOC_009182
TCONS_00018073 mRNA downstream 338211 21137153 ~ 21155641 (-) True XLOC_009182
TCONS_00018071 mRNA downstream 361372 21113967 ~ 21132480 (-) True XLOC_009181
TCONS_00018077 mRNA upstream 33474 21541010 ~ 21669618 (-) True XLOC_009188
TCONS_00018078 mRNA upstream 165918 21673454 ~ 21678634 (-) True XLOC_009189
TCONS_00018079 mRNA upstream 176899 21684435 ~ 21692630 (-) True XLOC_009190
TCONS_00018080 mRNA upstream 186852 21694388 ~ 21702317 (-) True XLOC_009191
TCONS_00018081 mRNA upstream 272145 21779681 ~ 21837515 (-) False XLOC_009192
TCONS_00018069 other downstream 384244 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018066 other downstream 515604 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018065 other downstream 537398 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018048 other downstream 663727 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018047 other downstream 682441 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018076 other upstream 14267 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018099 other upstream 753345 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018101 other upstream 1213229 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018102 other upstream 1447481 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018142 other upstream 2651417 24158953 ~ 24159067 (-) True XLOC_009227

Expression Profile

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