RNA id: TCONS_00019155


Basic Information

Item Value
RNA id TCONS_00019155
length 617
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_009205
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23144954 ~ 23154260 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGGGTGTTATTGGTGCGAATTAGATACAAGTCACAATAAGGAGAATTTGAGATTGGGAAGGAAAGCACTACATTTATCAGTTTTTCACACCATCTGCTACTGCAAGGCCGGAAACAACTGCCTGCAGTCCAGACACCTGTATTTTGGCAAAACCTGAAgttactgttgtgtgtgtgtgtctgtgtgaaagaACATGAAGACAGAATGTGTGCAGACTGTCATGACAAATCACTCAACACAGCATCCATTGCTGGCGGCCATGAAGCTGAGCTGCTAATCACACGACACCCAAAAGTGCATCTGCAAGGGCTTTTACGGCCCCTCGGGACCCTCTCTTACTCTACAATGATGGGCTACTGGAGCTCTGCTGTAAATGAGAGAGAATCTCTGGATAGTGGACACCAGGTTATAAGATGGTGTTTTAGCTTCAAGAATCAATCCTTGAAAGTGCAGTAGATCTGTTAAATTATAGATTTGGATTAGAAAGGTGCTTTAAGATGTAAGAAGTGTGAGGTTTATCTGGTGTTTGTGTGATGCTGATTAAACCTTGCAGCATATGTCTAATGAGAGAGAGGATTAGAAGTAGAGAAAGTCAGGGGAAGTAATGGTGTAGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019153 lncRNA downstream 553849 22588504 ~ 22594885 (-) True XLOC_009202
TCONS_00019152 lncRNA downstream 986756 22160925 ~ 22161978 (-) True XLOC_009198
TCONS_00018093 lncRNA downstream 1244508 21900306 ~ 21904226 (-) True XLOC_009195
TCONS_00018083 lncRNA downstream 1335286 21805114 ~ 21813448 (-) True XLOC_009192
TCONS_00018823 lncRNA downstream 1641246 21495320 ~ 21507488 (-) True XLOC_009186
TCONS_00018104 lncRNA upstream 46521 23200775 ~ 23206583 (-) True XLOC_009206
TCONS_00018118 lncRNA upstream 334382 23488636 ~ 23495610 (-) False XLOC_009213
TCONS_00018119 lncRNA upstream 338141 23492395 ~ 23495574 (-) True XLOC_009213
TCONS_00018126 lncRNA upstream 490058 23644312 ~ 23645278 (-) False XLOC_009216
TCONS_00019156 lncRNA upstream 490058 23644312 ~ 23646953 (-) False XLOC_009216
TCONS_00018100 mRNA downstream 844541 22302724 ~ 22304193 (-) True XLOC_009201
TCONS_00018098 mRNA downstream 897645 22164549 ~ 22251089 (-) True XLOC_009199
TCONS_00018097 mRNA downstream 1000874 22135987 ~ 22147860 (-) True XLOC_009197
TCONS_00018096 mRNA downstream 1009168 22133839 ~ 22139566 (-) False XLOC_009197
TCONS_00018095 mRNA downstream 1079627 22047004 ~ 22069107 (-) True XLOC_009196
TCONS_00018103 mRNA upstream 45963 23200217 ~ 23206562 (-) False XLOC_009206
TCONS_00018105 mRNA upstream 117608 23271862 ~ 23342752 (-) True XLOC_009207
TCONS_00018106 mRNA upstream 214766 23369020 ~ 23376541 (-) True XLOC_009208
TCONS_00018107 mRNA upstream 227945 23382199 ~ 23420170 (-) False XLOC_009209
TCONS_00018108 mRNA upstream 228993 23383247 ~ 23420079 (-) True XLOC_009209
TCONS_00018102 other downstream 193602 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018101 other downstream 427853 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018099 other downstream 887737 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018076 other downstream 1608458 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018069 other downstream 2039126 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018142 other upstream 1004699 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018151 other upstream 1754140 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018157 other upstream 1930567 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018169 other upstream 2084235 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018173 other upstream 2124591 25278845 ~ 25284045 (-) True XLOC_009245