RNA id: TCONS_00018097


Basic Information

Item Value
RNA id TCONS_00018097
length 1083
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_009197
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22133839 ~ 22147860 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTAAGTGGCTACTTGGTAAGAAAACAAAGGCAAGCGTCTCTGTTCTCTCCAGCTGCTGAGGTTTGGCGATGGAGCAGCTGTACTATTTATGATGTGGATGCAGAAGAAAACCCTCCCTCCGTCACTGACATCTTGTGAAACAGCTCGTTTTGGATTCACCGGATTTCTATATTAAGCACGAATTTTCCACAGGAATCGTTAAGATCCACAGGTCTTTTGATTGTCGAGCGTCGCCATGGAGCAGCAGCGTCAGCTTTTAGTTTGACGCGCTCGCGGATGTTTGTATCTCGGAAGGCTGGAGTGAGTCTGAGACGCCGCCCTGTTGTTAGAACTCCCAGCATGGAAACTCACGGGAGGCTTGTATTGCATTTGCTATTGCTGTTCATATTCGCTGTGGTGGAGGTCAGGCTGGTGTGTGTGGATGTGCCATCAGACGGCGAGGCCATTGTAGGCAAAGTTAAGAAGTTAACCTGCATCTACTGCATGAAACGAGAGGAAATCCTGGCTACCACCAAAGTGGAGTGGTTTTACAAGGGCcaagataaaaacaaaactagAACACTTATCTATCTGTATGACGGCGAGCCGCAGGAGCCGAAGGATGTAGATGAGCAATGGAAAGGTCGGGTAACATGGACGGGCAGTAAGGACATGCAGGACGTCTCCATTAGCatcctaaatgtcactttaaacgaCACTGGCACATACGAATGTGAAGTAACTCGCTTCTTTGAGTTTGATTCATTCAAGCTTTCCGCCAACAAGAACATCAGAATCAATCTGAAGGTAAACATGCGAGCGAGTGCAGACATCACGGCGCTGTACTCTGAGATCATGATGTATGTGCTGCTGGTGTTCCTCACCTTCTGGCTGCTGGTGGAGATGGTCTACTGCTACAGGAAGATCTCCAAATCTGACGAGCAAGCACAGGACACTGCGACAGACTACTTAGCCATTCCctctgaaaataaagaaaacccgGGCCCTGCTGTAACGGAATAAAAGTCACTCACCATACGGTATTTTTGAATTTACCACATTAGAACCATCATCAACAGTTTCCCACTCATCCCGAGTAG

Function

GO:

id name namespace
GO:0086091 regulation of heart rate by cardiac conduction biological_process
GO:0086002 cardiac muscle cell action potential involved in contraction biological_process
GO:0086005 ventricular cardiac muscle cell action potential biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:2000649 regulation of sodium ion transmembrane transporter activity biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017080 sodium channel regulator activity molecular_function
GO:0019871 sodium channel inhibitor activity molecular_function
GO:0044325 ion channel binding molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070920-2 Predicted to enable sodium channel inhibitor activity and transmembrane transporter binding activity. Predicted to be involved in regulation of heart rate by cardiac conduction; regulation of sodium ion transmembrane transporter activity; and ventricular cardiac muscle cell action potential. Predicted to act upstream of or within regulation of ion transmembrane transport and sodium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Is expressed in atrium; brain; cardiac ventricle; and eye. Human ortholog(s) of this gene implicated in Brugada syndrome 7. Orthologous to human SCN3B (sodium voltage-gated channel beta subunit 3).

Ensembl:

ensembl_id ENSDART00000149784

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018093 lncRNA downstream 231761 21900306 ~ 21904226 (-) True XLOC_009195
TCONS_00018083 lncRNA downstream 322539 21805114 ~ 21813448 (-) True XLOC_009192
TCONS_00019151 lncRNA downstream 628451 21493852 ~ 21507536 (-) False XLOC_009186
TCONS_00018823 lncRNA downstream 628499 21495320 ~ 21507488 (-) True XLOC_009186
TCONS_00018822 lncRNA downstream 766828 21367163 ~ 21369159 (-) True XLOC_009185
TCONS_00019152 lncRNA upstream 13065 22160925 ~ 22161978 (-) True XLOC_009198
TCONS_00019153 lncRNA upstream 440644 22588504 ~ 22594885 (-) True XLOC_009202
TCONS_00019154 lncRNA upstream 997094 23144954 ~ 23154260 (-) False XLOC_009205
TCONS_00019155 lncRNA upstream 1000874 23148734 ~ 23154254 (-) True XLOC_009205
TCONS_00018104 lncRNA upstream 1052915 23200775 ~ 23206583 (-) True XLOC_009206
TCONS_00018094 mRNA downstream 61672 22046557 ~ 22074315 (-) False XLOC_009196
TCONS_00018095 mRNA downstream 66880 22047004 ~ 22069107 (-) True XLOC_009196
TCONS_00018092 mRNA downstream 257991 21876139 ~ 21877996 (-) True XLOC_009194
TCONS_00018090 mRNA downstream 258127 21875549 ~ 21877860 (-) False XLOC_009194
TCONS_00018091 mRNA downstream 258175 21875790 ~ 21877812 (-) False XLOC_009194
TCONS_00018098 mRNA upstream 16689 22164549 ~ 22251089 (-) True XLOC_009199
TCONS_00018100 mRNA upstream 154864 22302724 ~ 22304193 (-) True XLOC_009201
TCONS_00018103 mRNA upstream 1052357 23200217 ~ 23206562 (-) False XLOC_009206
TCONS_00018105 mRNA upstream 1124002 23271862 ~ 23342752 (-) True XLOC_009207
TCONS_00018106 mRNA upstream 1221160 23369020 ~ 23376541 (-) True XLOC_009208
TCONS_00018076 other downstream 595711 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018069 other downstream 1026379 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018066 other downstream 1157739 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018065 other downstream 1179533 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018048 other downstream 1305862 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018099 other upstream 113021 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018101 other upstream 572905 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018102 other upstream 807157 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018142 other upstream 2011093 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018151 other upstream 2760534 24908394 ~ 24908479 (-) True XLOC_009234

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_04057264_04059507.mRNA True 2414 mRNA 0.37 3 CI01000072 4057264 ~ 4061351 (+)
eurasian perch (Perca fluviatilis) TU28208 False 2126 lncRNA 0.47 3 NC_053113.1 30759574 ~ 30767263 (+)