RNA id: TCONS_00018119


Basic Information

Item Value
RNA id TCONS_00018119
length 784
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_009213
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23487730 ~ 23508214 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTAAATAGTAAAAGCTGTCTATTGCAGACGATCCATGCTTTAGGATAACcttttatatttatctatttttcaGTTACTAATTTTGCTTTTCTCCATTTGCTTTTACAGGACCCGGGGCATGTTGAGAGTCATACGTTTGCGACAAGCTCTCTGACTCAGTTCTGCATTCTTTTCAAAAGAACATTCATTACAATATGCAGAGACCAGGTTTTGACACATCTGCGGCTAATGTCGCATATCTCCATTGGAGTGCTGATAGGCCTTCTATACCTCAATATTGGCAATGATGCCAGCAAAGTCTTCAACAACACTGGCTTCCTCTTCTTCTCAATGCTCTTTCTCATGTTTGGAGCACTGATGCCTACAGTTCTTACTTGTAAGTTGGTGAAGAAACACATCACAGGCACATTTCACTACCAACCCATTGCAGCATTTCAATTTTGGGTCTAACATCACGTCCAACATTCACTCAGGGGAAGTGAAAATGGTTTTTGCTGTAATTTTCTGTCCTGCTTTCAGTtcccctagagatggctgtgttTCTAAGGGAACACCTGAACTACTGGTACAGCCTAAAGGCTTACTATCTAGCAAAGACAATGGCTGACATTCCCTTCCAGGTCCTCTGTCCCATTATGTATTGCAGTATTGTGTACTGGATGACTGAACAGCCTCCAGAGGCAAGCCGCTACTTGTTGTTTTTGGCTTTGTCGATCTGTACAGCTTTAGTAGCCCAGTCTCTAGGGCTCCTAGTCGGTGCTGCCTCCACATCTCTTCAGGT

Function

GO:

id name namespace
GO:0033344 cholesterol efflux biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-10 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol efflux. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).

Ensembl:

ensembl_id ENSDART00000152583

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018104 lncRNA downstream 285812 23200775 ~ 23206583 (-) True XLOC_009206
TCONS_00019154 lncRNA downstream 338135 23144954 ~ 23154260 (-) False XLOC_009205
TCONS_00019155 lncRNA downstream 338141 23148734 ~ 23154254 (-) True XLOC_009205
TCONS_00019153 lncRNA downstream 897510 22588504 ~ 22594885 (-) True XLOC_009202
TCONS_00019152 lncRNA downstream 1330417 22160925 ~ 22161978 (-) True XLOC_009198
TCONS_00018126 lncRNA upstream 148738 23644312 ~ 23645278 (-) False XLOC_009216
TCONS_00019156 lncRNA upstream 148738 23644312 ~ 23646953 (-) False XLOC_009216
TCONS_00018127 lncRNA upstream 149029 23644603 ~ 23646953 (-) True XLOC_009216
TCONS_00018135 lncRNA upstream 297076 23792650 ~ 23793280 (-) True XLOC_009222
TCONS_00019157 lncRNA upstream 1066247 24561821 ~ 24563061 (-) True XLOC_009228
TCONS_00018113 mRNA downstream 6643 23468025 ~ 23485752 (-) False XLOC_009212
TCONS_00018115 mRNA downstream 10307 23468820 ~ 23482088 (-) False XLOC_009212
TCONS_00018114 mRNA downstream 10307 23468820 ~ 23482088 (-) False XLOC_009212
TCONS_00018116 mRNA downstream 17344 23469122 ~ 23475051 (-) True XLOC_009212
TCONS_00018112 mRNA downstream 24645 23452862 ~ 23467750 (-) True XLOC_009211
TCONS_00018120 mRNA upstream 15833 23511407 ~ 23523222 (-) False XLOC_009214
TCONS_00018121 mRNA upstream 19158 23514732 ~ 23529945 (-) False XLOC_009214
TCONS_00018122 mRNA upstream 20598 23516172 ~ 23522653 (-) True XLOC_009214
TCONS_00018123 mRNA upstream 48857 23544431 ~ 23546452 (-) True XLOC_009215
TCONS_00018124 mRNA upstream 148144 23643718 ~ 23647078 (-) False XLOC_009216
TCONS_00018102 other downstream 537263 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018101 other downstream 771514 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018099 other downstream 1231398 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018076 other downstream 1952119 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018069 other downstream 2382787 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018142 other upstream 663379 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018151 other upstream 1412820 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018157 other upstream 1589247 25084821 ~ 25093717 (-) False XLOC_009240
TCONS_00018169 other upstream 1742915 25238489 ~ 25268641 (-) False XLOC_009244
TCONS_00018173 other upstream 1783271 25278845 ~ 25284045 (-) True XLOC_009245

Expression Profile

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