RNA id: CI01000158_00651772_00657903.mRNA


Basic Information

Item Value
RNA id CI01000158_00651772_00657903.mRNA
length 2502
RNA type mRNA
GC content 0.41
exon number 5
gene id CI01000158_00651772_00657903
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 650335 ~ 658338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCACTGCATTATGGCCTGTCTCATTCAGTGCTCTGTAGATCCACCTTGTGCAGACAGGAGCATGTGAAAAATAAAGGTTTTCAGACTTGGGAAGTAAACTCTCATGACCGGCTAGAGGGAGTGTCCTCATGTACTCCGCCTATAGTGATGGTGCAGACCATGTGTAGACAGGCACAGGAAAGACTCACATGTCACACAGCCTCAATTACAGTAGCACGCTCTGATCTGGGGTATACTTGAAAACACAGTCACATGGTTTGAAAAGAAAAGAAAAAAAGCAAGAGGAGGAGGAAGTGGGGACCGGATAGCAGCATGCTTACCTGGCAGAGTTTTAGTCTCACCGTATCCTCACCGATGAATTTACCTGACACTTCTGTGCACTTGGGCACCTATTGGAGGAACTGACTTGGCCGGTGCGGCCCGCAAAAAGGACATGACACAGAACGGCACTGTAGCCGGCAATGGCACTCAAGCTGATGCTCTCAAAATTGTGATCGTCGGAGACGGAGGATGCGGAAAGACATCCTTGTTAATGGTGTACGCCAAAGGAGATTTCCCAGAGAAATACGCTCCATCTGTGTTTGACAAATATGTCACCACTGTGTCTTATGGAGGGAAAGACATTCAGTTGAATCTCTACGACACAGCAGGCCAGGAAGACTATGATCGCTTGAGGCCTCTGTCGTATCAAGAAGTAAACCTCGTTATCATCTGCTATGATGTGACCAATCCAACGTCATTCGACAATGTCACAATAAAGTGGTACCCAGAAGTCCGTCATTTCTGCCGTGATGTCCCCATTATCTTGATAGGGTGCAAAACGGACCTGCGAAAAGACAAAGAGAAGACAAGGAAGCTCAAAGCCTTAGATATGGCGCCCATCACCTACCTCCAGGGTGAAGAGGTCCAGAAGCAAATGAACGCTGAGGTATACTTGGAGTGTTCGGCTAAATATAGAGAAAACGTTGAGGACATTTTCAGAGAAGCAACCAAGCGAGCGCTAGCGGCCAGAGCTAAAGCAAGACACCTTCACAAGAAGAAGAAACGCTGCACCATTCTGTGACCAGTCCTGGAAGAAATAGATTTTTTTCAAGTTTTTGTATATATGAATTGCAATATTTTTAAACATTTTGGATCCATCTGCAAAGCTTCTCAGAACTGTTTAAGCTTTCTCGAAGGAATATTTTTTAAAGACATGGGGTGTGCGTTTTCTCACAATCTTCCCACCAAGCAAGGCTTACTGTATGACAGAGATCACCACTGTGCATGCGATAAGTTTGTAACATCCATGCCACATCCTTCTGTTGGTGTTACTGATATGACTTAATGGAATTTTGCCTTCCATGATGATGGATCCAATAGGAGATGGAAAAACTGCTGCTGATATCTCAGGGACGACAAATACATATTACAGGAACATATTTGAAGTTTGGTTACAGTCTGTGTCGTGCACTGTTGTATAATAATGGTGTACTGTTGTAACGCACAACTAACTCATGTAACTGCCTTTATTATGACACTGGGGTGTAACATGTTTCTGTTGTGTAATTCATTTGATCTACTTGCGCAATAGTTACAGTTGAAATTTTAAACTTTGAATTACAGTATTTTGTCAGTCCACGTATTATATAAAGCTTTCAGAATTTTCTGTACACAAAAATAGGCCTACTGTGGTAAGTAGGCCTACTGAAATAAGCCTAAAGGCCCGTTCACACCAAAGACGATAGCTGTAACGATAGCGATATAGTTTTAAGAATCGTTATAAATATAAGAATAACATAGTCCACACCACAACTATAACGGCACAGAGAAACGATATCGTTGAATCATTTTCACAACTATTTTTCCAGCTGATGAACGATAAAAACATTGACAGCCAATCAGAATCCATTCTGCTTTAAAGAACACGAGTATTTAAAGTGGCAGGCGACAAACTGCGGCGCACGCAGTTATTATCGCTATAGTTATTTTTCTTGGTGTGAGCGGGCCTTAACTGTAGACCACCACCATTTCCATCATGTTAAGTAGAATTTCACTTTTTATTTCTTTCAGTATGGGGTTATTTACTATCCGTAATTTGTTCAGATCTCATATAGATGCCAGAAAGTGTTGAATCATTTATGCTGAAACCATTTGTCTGTTCCACCCTGTATGTAGATTGCACAATTAAACCTTCAATTGCCTTTTCGCCTACTGAAGGAAATTGTGTGTGAACAGGATAATGTCACTATTAAAATTCTGTAGCTCTTTTATATAGCAGTGTATTCATTTTACATTGGCACAGATAGTTTTCATTTTGCATGATGCAAATTTTTAGATTATAGGCAGACATATGACAGAAAATCTCTGCCTTGTCTGCAAAACAAACTTTGTCGTCAGAAAATACAAGTGATCTTGTTGTGGTTAGCACAAAAACTCCTGCCTAGCAGGATGCGACTGCATGTGGTAACGGAAGCCTCCAAGTACTGCTGCGTGTCAAAGAGCAAAGCTGAAGAATAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415062 lncRNA downstream 10381 639684 ~ 639954 (-) True G363891
TU415061 lncRNA downstream 18775 631250 ~ 631560 (-) True G363890
TU415060 lncRNA downstream 19488 630439 ~ 630847 (-) True G363889
TU415059 lncRNA downstream 20659 629511 ~ 629676 (-) True G363888
TU415052 lncRNA downstream 20659 629511 ~ 629676 (-) True G363888
TU414886 lncRNA upstream 1818 660156 ~ 663559 (-) True G363743
TU414890 lncRNA upstream 23712 682050 ~ 683825 (-) True G363747
TU415069 lncRNA upstream 75082 733420 ~ 733619 (-) True G363898
TU415071 lncRNA upstream 76226 734564 ~ 734800 (-) True G363900
TU415072 lncRNA upstream 76487 734825 ~ 735175 (-) True G363901
CI01000158_00638618_00641457.mRNA mRNA downstream 8878 638515 ~ 641457 (-) True CI01000158_00638618_00641457
CI01000158_00618753_00629015.mRNA mRNA downstream 21320 618684 ~ 629015 (-) False CI01000158_00618753_00629015
CI01000158_00608301_00616686.mRNA mRNA downstream 33454 607466 ~ 616881 (-) True CI01000158_00608301_00616686
CI01000158_00522039_00535779.mRNA mRNA downstream 114531 521745 ~ 535804 (-) True CI01000158_00522039_00535779
CI01000158_00453940_00462329.mRNA mRNA downstream 187926 453444 ~ 462409 (-) True CI01000158_00453940_00462329
CI01000158_00685933_00689194.mRNA mRNA upstream 27577 685915 ~ 689433 (-) True CI01000158_00685933_00689194
CI01000158_00694202_00704844.mRNA mRNA upstream 35585 693923 ~ 704844 (-) True CI01000158_00694202_00704844
CI01000158_00706860_00708304.mRNA mRNA upstream 48082 706420 ~ 708505 (-) True CI01000158_00706860_00708304
CI01000158_00709034_00714645.mRNA mRNA upstream 50301 708639 ~ 714645 (-) True CI01000158_00709034_00714645
CI01000158_00717478_00721819.mRNA mRNA upstream 58953 717291 ~ 722084 (-) False CI01000158_00717478_00721819
TU414879 other downstream 334946 314404 ~ 315389 (-) True G363736
TU414877 other upstream 61708 722381 ~ 722512 (-) True G363734
TU415299 other upstream 797796 1479208 ~ 1501547 (-) True G364103
TU415405 other upstream 1029628 1687966 ~ 1688828 (-) True G364203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005569 False 1448 mRNA 0.43 5 NC_007121.7 41969428 ~ 41980797 (-)