RNA id: CI01000168_01222730_01228035.mRNA


Basic Information

Item Value
RNA id CI01000168_01222730_01228035.mRNA
length 1094
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000168_01222730_01228035
representative True

Chromosome Information

Item Value
chromosome id CI01000168
NCBI id null
chromosome length 1293618
location 1222485 ~ 1228035 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCTGTTCCTCCTGCATACTCAGACCTGGGAAAAGCAGCCAAGGACATCTTCAGCAAGGGTTACGGTTTTGGGATTGTTAAATTGGACCTCAAGACTAAATCTCAAAATGGAGTGGAGTTCAACACATCTGGATCCGCCAACACGGACACGGGAAAAGCCGGCGGGAGTTTGGAGACCAAGTATAAAATGAGTGATCTGGGATTGAGTTTGAACCAGAAGTGGAACACAGACAACATGCTCAGTACAGAAGTCTCTGTGGAAGACCAGCTTGCGCAGGGGTTGAAAGTGGCCCTGGATACATCTTTTGTCCCAAACACAGGTAAGAGGAGCGGTAAACTGAAGACTGGCTACAAGCGTGACTTTGTCAACATGAGCTGCGACATTGATTTTGAGGGTCCGGTCGTGCACTCTTCAGCGGTTCTGGGATATGAAGGCTGGCTCGCGGGCTACCAGATGGCGTTTGACACGGCCAAGTCCAAACTGGTGCAAAATCACTTCGCTCTGGGATACAAGACCGGAGACTTCCAGCTTCACACCAACGTCAGTAATGATGGAGCTGAGTTCGGAGGATCGGTCTATCAGAAGGTGAATGATCAGCTGGAGACGGCCGTCACTTTGTCCTGGACTGCCGGCAGCAACAACACGCGCTTCGGAGTTGCTGCAAAGTACCAGCTAGATAAAGATGCCTCGTTGTCTGCCAAAGTGAACAATTCCAGCCTGATTGGAGTTGGTTACACTCAGAGTCTTCGACCTGGGGTGAAACTCACTCTCTCGGCTCTCATCGATGGAAAAAACTTCAACACCGGCGGACACAAGGTTGGACTGGGTTTTGAGCTGGAAGCGTAGCTGCCGTAGTGCAAAAGACACTGAAGACGAGAGACCCAGTCCTCACAACCCTCCTGCATCACACACTAGCACCTGATGACTAACAACACTTAGCGGCATGTTGATGGTTTTTGCAAGTCTGTGGGAGTTGAGTGATTCTGATCTGATCTGATCTGGCCTTCTAAGGGAAATATTTGCCGGTCAGCAAATTTATTTAACGATGGTCGGATATTTACTGTAGACCACCTGCAGCAAACCAAAATACA

Function

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG:

id description
K15041 VDAC3; voltage-dependent anion channel protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423596 lncRNA downstream 55059 1162126 ~ 1167426 (-) False G370950
TU423598 lncRNA downstream 55059 1162756 ~ 1167426 (-) True G370950
TU423594 lncRNA downstream 59283 1162126 ~ 1163202 (-) False G370950
TU423638 lncRNA downstream 178804 1042636 ~ 1043681 (-) True G370979
TU423640 lncRNA downstream 201590 1015060 ~ 1020895 (-) True G370981
TU423725 lncRNA upstream 33527 1261562 ~ 1281486 (-) True G371046
CI01000168_01202307_01215499.mRNA mRNA downstream 6986 1201791 ~ 1215499 (-) True CI01000168_01202307_01215499
CI01000168_01151161_01160955.mRNA mRNA downstream 61530 1150969 ~ 1160955 (-) True CI01000168_01151161_01160955
CI01000168_01121464_01135373.mRNA mRNA downstream 87112 1120757 ~ 1135373 (-) True CI01000168_01121464_01135373
CI01000168_01110611_01115503.mRNA mRNA downstream 106862 1109835 ~ 1115623 (-) True CI01000168_01110611_01115503
CI01000168_01097284_01099844.mRNA mRNA downstream 122641 1097094 ~ 1099844 (-) True CI01000168_01097284_01099844
CI01000168_01250022_01255577.mRNA mRNA upstream 21937 1249972 ~ 1255577 (-) True CI01000168_01250022_01255577
CI01000168_01266573_01268627.mRNA mRNA upstream 38526 1266561 ~ 1268627 (-) True CI01000168_01266573_01268627
TU423608 other downstream 400464 818571 ~ 822021 (-) True G370953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003644 False 5765 mRNA 0.39 9 NC_007121.7 3299829 ~ 3322338 (+)