RNA id: TU456848


Basic Information

Item Value
RNA id TU456848
length 1008
lncRNA type sense_over
GC content 0.43
exon number 2
gene id CI01000242_00457985_00464094
representative True

Chromosome Information

Item Value
chromosome id CI01000242
NCBI id null
chromosome length 629286
location 456146 ~ 464094 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATTGCGAACGCGATGCCTGATTTCCACAGCTCTATGAAGGAGCGTTTGCGGACACCGGAGCAAGGGGCCGATACGGTCGTGTGGCTCGCTGTGTCCGAGGCGGCTGTCAAGAATCCCAGCGGGCATTTTTTTCAGGATCGGCAGATGGTGTCGGCTCATCTTCCCTTGGCCTGGACGCACAGTTCACAGCTGGAAGATCAGAAATTCATGAGCGTCATGGAGGATCTGGCCAAGGGCTTCCAGCCTCACTAAATACACTTGCATGACACAATTGCAACACAAATAAATGTAGAACACTAACACACAACATTTTAACAGTTTAGACACATTATTCTCACCTGTAAAAGCAGTGTGAATGTACTTACAATACCTCACAACAACTTTTAGCTGTAGATTTAAATGTCCTCCTGAACTCTGAAAGTTTGAAGGTGTGAAAGACTGTTATGCTCAATAAATGCTTAAATACGTTTAAGTCTTTTACCACAGTGACTACTTCCTGTTTGTTCCTGTTCTGCTTCCTTGTACATTTCAATTCTCTCCTATCATTGGTCACAGAAGACGCAGGAATCCTTCTTTTCCGACAGCTTGTTCTGACACCATGTGATCAATCTCAGCCAATCGCAGTGCGTTCTCACTGTGTCGGTGACTCCAACGAATCAGGTCAATCAGGTGGGAACCCGTTCTGACCGGAGTCACCCCAGCTGTCAATCACTCACTCATGGCCAATCACCTGGTGAAGCACAGGAAACTGACTGGAAAGAACATTTCCTGCTTTTGGGGGCCTGTGATTGGACGTTTCTTTGGTTTGAAAGTGTCACCTGATGTTCCAGAGAATGAGGAAGTGATGTGTAGAGTTTTTTTTTTTTTTTAATTGTTATTTGTTCTGACAATAATGTATGATTACATTATTACATATATAGACTGTGTTATTAATCATTTAATTATGACTGTATTTTCACAAGTTTTCGTCAAACATTAATAAATATCTTTGTGTGTTGGTGTATGT

Function

GO: NA

KEGG:

id description
K11168 DHRS12; dehydrogenase/reductase SDR family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456814 lncRNA downstream 19489 429683 ~ 437756 (-) False G398308
TU456810 lncRNA downstream 19581 436656 ~ 437664 (-) False G398308
TU456812 lncRNA downstream 19581 436656 ~ 437664 (-) True G398308
TU456838 lncRNA downstream 58642 397860 ~ 398603 (-) False G398325
TU456839 lncRNA downstream 58642 397860 ~ 398603 (-) True G398325
TU456855 lncRNA upstream 37086 497978 ~ 498741 (-) True G398337
TU456861 lncRNA upstream 82270 543162 ~ 543512 (-) True G398343
TU456864 lncRNA upstream 110779 571671 ~ 577089 (-) True G398346
TU456859 lncRNA upstream 136606 597498 ~ 598788 (-) True G398341
TU456863 lncRNA upstream 138036 598928 ~ 604457 (-) True G398345
CI01000242_00385392_00398812.mRNA mRNA downstream 58433 385227 ~ 398812 (-) False CI01000242_00385392_00398812
CI01000242_00300190_00331091.mRNA mRNA downstream 126154 300158 ~ 331091 (-) False CI01000242_00300190_00331091
CI01000242_00272088_00293729.mRNA mRNA downstream 163516 271406 ~ 293729 (-) True CI01000242_00272088_00293729
CI01000242_00264251_00267773.mRNA mRNA downstream 189472 263213 ~ 267773 (-) False CI01000242_00264251_00267773
CI01000242_00230847_00255610.mRNA mRNA downstream 201037 230847 ~ 256208 (-) True CI01000242_00230847_00255610
CI01000242_00475400_00477268.mRNA mRNA upstream 14465 475357 ~ 478060 (-) True CI01000242_00475400_00477268
CI01000242_00499626_00500135.mRNA mRNA upstream 38649 499541 ~ 500690 (-) True CI01000242_00499626_00500135
CI01000242_00508735_00531321.mRNA mRNA upstream 47669 508561 ~ 531645 (-) True CI01000242_00508735_00531321
CI01000242_00546022_00570147.mRNA mRNA upstream 84145 545037 ~ 570383 (-) True CI01000242_00546022_00570147
TU456773 other downstream 125869 331321 ~ 331376 (-) False G398279

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017432 True 3341 mRNA 0.42 10 NC_007126.7 43166511 ~ 43198413 (+)