RNA id: TCONS_00017432


Basic Information

Item Value
RNA id TCONS_00017432
length 3341
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_008774
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 43166511 ~ 43198413 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTCTGTACCGGAACTCAGCATGGTTCCTCAAAGGACTCACCGAATTCACCAAGGGGGCGTTTCTGTCGGCGTCTAAAAACTTTGTAGAGAAAGACCTGGAGACGTCGATGGCGGGCCGATCCTTCATGATCACCGGAGCCAACAGCGGCATTGGGAAAGCAGCCGCCATGGCCATCGCCAAGAAAGGTGGTACAGTCCACATGGTCTGCAGGAACAAAGACAAGGCAGAGGAAGCCCGAGCCGAGATCGTCAAAGAGTCTGGAAACAAAGAGATCTATGTGCATATTCTGGATCTGTCCGAGACCAAGAAGGTGTGGGAGTTTGTAGAGTCTTTTAAGAAAAAGTACAAAACCCTCAACGTCCTGATCAATAATGCCGGCTGTATGATGACTAAAAGAGAAGTGAATGGTGAAGGTTTGGAGAAAAGCTTCGCTAGCAACTCTCTGGCGGTGTTCATCTTCATCAAGAGTCTGATTCCTCTGCTGGAGAAGAGTCCTGACCCACGTGTGATCACCGTCTCCTCTGGCGGAATGCTGGTGCAGAAACTGCGCACTGGAAACTTGCAGTCGCAGAGAGGCAGATACGACGGCACTATGGTGTACGCGCAGAACAAGAGGCAGCAGGTGGTGATGACGGAGCAGTTCGCTAAAGCTCATCCCAGCATCCACTTCTCTGTCATGCACCCTGGATGGGTCGACACGCCGACTATTGCGAATGCGATGCCTGATTTCCACAGCTCAATGAAGGAGCGTTTGAGGACACCAGAGCAAGGAGCAGATACAGTGGTGTGGCTCGCCGTGTCTGAAGCGGCTGCCAAAAACCCCAGCGGACGCTTCTATCAGGATCGGAAGATGGTGTCGGCTCATCTTCCTCTGGCTTGGACACACAGCTCACAGCTGGAAGATCAGAAATTCATGAGCGTCATGGAGGATCTGGCCAAGGGCTTCCAACCTCACTAAATACACTCGCATGAAAGAATCGCAGCACAAATAGATGttaaacactaacacacacatttGACCAGCATACATGCATTATTCTCACCTGTAAAAGCAGTGTGAATGTACTCACCGTGCCTCACCACCAATGTTTAGCTGTAGATTAAACATCCTCCAGATCTCTGAACGTTTGAAGGTGTGAACGACTGTTACGCTTAATAAATGCTTCAAAACATTCGTCTTTTACCACAGTGACTACTTCGTTTTTTAATATTATCGTACATTTCATTTCTCTCCAATCACTGGCCGCATCAGGCGCAGGAACGTTTCTTTTGACACCATGTGATCAatctcagccaatcacagtgaGCTCTCACTCTCACTGTGCCGGTGACTCCAACGAATCAGGTCAATCTGGTGGGAACCCGCTCTGACCGGAGTCacccagctgtcaatcactcactCAGCCAATCAAGTGGTGAAACTGACCGAACAGGACACTTCCTGCTGTTTGGGGGACAGTGATTGGACGATTCTTGGGTGGACTGACACCTGATGTTCCAGAGGAATGGGGaagtgatgtgtgtgttttttttttttaatcataatttatTCTCTAAATAATGAATGATTCCATTTCTACATATATCGATTGGgttattaatatttatgacaCGACTGTACTCTGATACTTTTTGgtcaaatgttaataaatgtcttTGAAAGCGTGTTAAATTCAGTGTTGATATATGTGGGAGTAAAAAGAAAATCTGCTAAAATGTGTGTAGGATATATACTGCAATACTTTGGtgtttattcaaattattttactTGTATACATTGAAAAATGTGCTAAGCATTTGCATTCATGTTTCTATTGCTAGTTTTGCAAGCCTGCACTGAATATTTGTAAGTCTATCGAGAAAGTATGATTTTtgagaaaaatgaaaaatcaagAAATACTCAAGAAGATCCATTTTTAAACCTATGACAAGTAGATTTTAGACattcaaacgaattagccacttattaataaaaaaaaatctacaagtAAAATAGTTACAAATTGCCTTAAACTGCTGGTATTTTGAGAACGCAAAAGCATTTCAATAAATTTGCCCCCAGGAAAACATTTGCATGTCTCCAAAAACTATGCATTTGCTCAAaataaattgtagttttttttttttgttttgttttttttactgtgatcTGACAATTTTCTGCACCAAACTTTGcataaaacaagaaaacaactcacaaaatgtaaaatagttgcaAACTGCAGAGAGATTGTGTCAATGTTTTTCTGTGGAATGCAAAAATAACacatttccttttcttcaaaaaaaaaaaaaaaaaaaaagcaaagtggGCAAAAGCAAGTGATATGGAAGACTTTAACCATTAAATGATAAAAAgcaactagattattaaagtttgaggacaaactttatggtggcttaaATAGCTGAGTCtaaaagtttgaagtggttttaaagtgtaaatagcatgttagtatgattctagcttgaattagcatgttactagcatgaattagcatgctgttagcatgattctagcatgaattagcaaattagcatgattctaccatggtttagcatgttgttagcatgtttctagcatgaatcagcttgtttctagcatgaattagcatgttgttagcatgaattagcatgatgttagcatgtttctaacaaaATTAGCATGTCAGTAGCATGTCAAAACTATTAGCATGTGTTAAAATAGCTAGTCATATTCTATGGAACAGACTGACTCTAGtgtgtaggacagtctgatgcaaagTTATGACCTCACAAAGGTTGactatgttaagtcaatggcagtcttttacaatagaagtctatgggacagttgctagggtgcaatAAGTGGTTGCtggggagtggctagtaagtttaaaggtcatcagtggttGGCTGCTGGCTAGTCtgagttaagcctggtttatacttctgcgtcaagtgaccggcgtaaccaacggcgcatgcaacgcacgtagctgtgcatttatacttctgtgcgctgtttctgttgttctgcattaacacttctataacgctagttggcagtgaggtgttcaTTTTCCtgtgtgtcgagtttctttgctgctgttttgttCTTCATGAACACTTCctaaatgtacaagtggctcaaactcgctcattttgaggcaggaaccggcggacgtgcaacaactttaactatgaggtaaacacaaaacaaaacttttcatctggagctccttcacggactccgcacttgtaaacaatcgctccatcgggctctcAGTCctgcccagacttgtcagcgctaccaagccgaccaatcacagagcttgcgctacgcgtcgttgc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8104 Acts upstream of or within with a positive effect on positive regulation of oligodendrocyte differentiation. Is expressed in several structures, including heart; integument; liver; nervous system; and pleuroperitoneal region. Orthologous to human DHRS12 (dehydrogenase/reductase 12).

Ensembl:

ensembl_id ENSDART00000011737

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018793 lncRNA upstream 73393 43092822 ~ 43093118 (+) False XLOC_008773
TCONS_00018792 lncRNA upstream 174863 42991400 ~ 42991648 (+) True XLOC_008771
TCONS_00019055 lncRNA upstream 569121 42595624 ~ 42597390 (+) True XLOC_008768
TCONS_00017417 lncRNA upstream 849171 42312871 ~ 42317340 (+) True XLOC_008764
TCONS_00017416 lncRNA upstream 879285 42285719 ~ 42287226 (+) False XLOC_008764
TCONS_00019056 lncRNA downstream 5442 43203855 ~ 43208245 (+) False XLOC_008775
TCONS_00019057 lncRNA downstream 5519 43203932 ~ 43208245 (+) True XLOC_008775
TCONS_00019058 lncRNA downstream 191180 43389593 ~ 43389953 (+) True XLOC_008776
TCONS_00019059 lncRNA downstream 747307 43945720 ~ 43946407 (+) True XLOC_008781
TCONS_00019060 lncRNA downstream 867738 44066151 ~ 44070403 (+) True XLOC_008783
TCONS_00017431 mRNA upstream 66112 43093044 ~ 43100399 (+) True XLOC_008773
TCONS_00017429 mRNA upstream 87969 42995051 ~ 43078542 (+) False XLOC_008772
TCONS_00017430 mRNA upstream 87969 42995381 ~ 43078542 (+) True XLOC_008772
TCONS_00017427 mRNA upstream 185044 42767803 ~ 42981467 (+) False XLOC_008770
TCONS_00017428 mRNA upstream 185439 42933236 ~ 42981072 (+) True XLOC_008770
TCONS_00017433 mRNA downstream 134708 43333121 ~ 43389922 (+) False XLOC_008776
TCONS_00017434 mRNA downstream 199904 43398317 ~ 43510872 (+) False XLOC_008777
TCONS_00017435 mRNA downstream 200029 43398442 ~ 43509723 (+) False XLOC_008777
TCONS_00017436 mRNA downstream 200059 43398472 ~ 43509723 (+) True XLOC_008777
TCONS_00017437 mRNA downstream 600845 43799258 ~ 43818697 (+) True XLOC_008778
TCONS_00017414 other upstream 849169 42285643 ~ 42317342 (+) False XLOC_008764
TCONS_00017418 other upstream 851756 42314628 ~ 42314755 (+) True XLOC_008765
TCONS_00017383 other upstream 3846277 39320120 ~ 39320234 (+) True XLOC_008735
TCONS_00017353 other upstream 5569438 37589787 ~ 37597073 (+) True XLOC_008706
TCONS_00017349 other upstream 5585676 37580721 ~ 37580835 (+) True XLOC_008705
TCONS_00017438 other downstream 630976 43829389 ~ 43829517 (+) True XLOC_008779
TCONS_00017459 other downstream 1662870 44861283 ~ 44861399 (+) True XLOC_008797
TCONS_00017469 other downstream 2415877 45614290 ~ 45614569 (+) True XLOC_008807
TCONS_00017470 other downstream 2418603 45617016 ~ 45617296 (+) True XLOC_008808
TCONS_00017473 other downstream 2445374 45643787 ~ 45649781 (+) False XLOC_008809

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU456848 True 1008 lncRNA 0.43 2 CI01000242 457245 ~ 460892 (-)