RNA id: CI01000299_06497414_06502931.mRNA


Basic Information

Item Value
RNA id CI01000299_06497414_06502931.mRNA
length 1739
RNA type mRNA
GC content 0.51
exon number 10
gene id CI01000299_06497414_06502931
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6497156 ~ 6502931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATCTAGCGATGTTCGGCTGTTTAGTCGCTGGAAGACTGGTCCAAACGGACGCGCAGCAGGTCGCCTCTGATAAGTTCGTCTTTAATCTGCCGGACTGTGAGAATGTCAATCACGTGGTGGTGTTCATGCTGGGCACGGTGCCCTTCCCGGCTGGCATGGGTGGCGCGGTGTACTTCTCTTTCCCGGACCCTGCGGTCGGGCAGGTCTGGCAGCTGCTGGGCTTCATAACCAACGACAAGCCCAGTGCCATATTCAAGATCTCCGGTCTGAAAGCTGGTGAGGGCGGCGCTCATCCGTTCGGCATGATGACCGTCCCTCAGGCGCCGTCAGTTGCTCAGGTCGGAGTGTCGATCGAGTCTTTGGACCTTCTCGCACAACAAACGCCAGTGTCAAATTCAGCTGTTTGCACCGTGGACTCCTTCACACAGTTCACACAGAAGATGCTGGAGAGCTTGTACAACTTCACCTCCTCTTTTGCACTGTCTCAGTCTCAGATGACACCGAATCCTTCAGAGATGTACGTTCCTGCGAGCTCCATCCTTAAATGCACTTCTGTCATGATTCAAATCATTGCAATGTGTGAATATGAGCGCAATCATCTGTCGACTCTCTCGAGACTTTCCGACGACGATATCGATCATATTTGGTCGAGCGTGTCGTGTTTTATTGAAAAACAGATGTTCCTGCGAAAGGGGGTTTGTGTCTTCGGTCTGGGGACTTTCACATTCTGTCAGCAGAAACTGAACCTCGGAAACAAACATATCCTCATACAGAGACCCGTTTTCATCCTGTCAGAGAAACTCTCTCAGTATTACGGGCTCAAACAGATCAAACCACAGGCTACAGTTCAGTCATTAGAAGCAGAACTAACGCGCGTCTCCTCAGACGTGCCCGTGGTGCCGCTCAACTTCTCGGCCGTGAGCGCGCAGAGCCCGTACGACAGAGACGCGGTGGAGGGATGTGTGCGCGAGACGCTCCATCTGCTGCTCCGCGCCGCGTGCGCGCGACAGTCTGTCCTTCACACCTTCCCTGGGATCGGCGTTCTCGCATTCCGGCAAAGCCGAGTCAAGATGATGTTCTACCGTGACTTTATCTCAGCTGTAGACGGCACTGGGAAACTTTCAGCAGCTTTAACTAACAGACTGGAAACAAGTAACGGTGGAGCATCTGAGAGACCTTCGAGCTTCACACTGCCCTCCATATCTGCAGGAGAACCGCTGAGAGAAGAGCCGCCAGCGGCCCGTCACACTGACCGTGATGATGGACGGGAGAGTCGGCCGGCAGCCGGAGAGACGGAGACTGACCTCACAGACGGGCTGCTGGACAAGAGTCCGTCAAACACTGACCGGTACATTTCAACAGAAGACGATGAAGATTCAGCTGAATTACATTATAATATTACACATTTAAATAGAATTCCTTATCATCACAAAAACACTGTTCAAAATCCCACTGGATGGAAAAACTTTCCAGACTGAAATGGTCTCTTTCTTGTTTCCATCTACTTAGAGTAATGACAGAAAAGGCGCTCAGATAAATCACATGACTAACCTCAGAATAGAGGCTTTATGTTACGCGCCATTCATGCAAACTCCGTGTGTGGCCGCAGAGTTCAGATGTCCGTCAGGAGAAAGTTCTCTTTAGTGATGATCAGTTTGAATGAATGAAATGTGAGCTTTAAAGCTGAAACTCAAAACTGGACTGTCAGTTTCTCCTCACAGCACAAATGCATTAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468822 lncRNA downstream 5138 6491757 ~ 6492018 (-) True G408023
TU468821 lncRNA downstream 5644 6491187 ~ 6491512 (-) True G408022
TU468820 lncRNA downstream 7452 6489437 ~ 6489704 (-) True G408021
TU468719 lncRNA downstream 31971 6462457 ~ 6465185 (-) True G407924
TU468732 lncRNA downstream 38036 6458779 ~ 6459120 (-) True G407937
TU468829 lncRNA upstream 38354 6541285 ~ 6546201 (-) True G408028
CI01000299_06476844_06477950.mRNA mRNA downstream 17607 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06362136_06376918.mRNA mRNA downstream 119921 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 136953 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 155316 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 176110 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06505676_06510021.mRNA mRNA upstream 2626 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 13664 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 19037 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
CI01000299_06526127_06532048.mRNA mRNA upstream 23196 6526127 ~ 6532048 (-) False CI01000299_06526127_06532048
TU468578 other downstream 573023 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 661167 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 1041048 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1568338 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1946435 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 29070 6532144 ~ 6534655 (-) True G407899

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000016 False 1047 mRNA 0.55 5 NC_007112.7 36552 ~ 39191 (+)