RNA id: TU467991


Basic Information

Item Value
RNA id TU467991
length 218
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G407318
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4129003 ~ 4129220 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCCTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAGAGTCAATGCAGCCATCTTCCAGGAGATTTTGGAGCACTTTATGCTTCCATCTGCTGACAAGCTTTATGGAGATGCTGATTTCCTTTTCCAGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467958 lncRNA downstream 1363 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA downstream 1363 4123317 ~ 4127640 (-) False G407288
TU467957 lncRNA downstream 2280 4121679 ~ 4126723 (-) False G407288
TU467956 lncRNA downstream 2280 4123490 ~ 4126723 (-) True G407288
TU467979 lncRNA downstream 62355 4066205 ~ 4066648 (-) True G407306
TU467968 lncRNA upstream 27605 4156825 ~ 4179627 (-) True G407296
TU468003 lncRNA upstream 78577 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 130262 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 137134 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 137999 4267219 ~ 4267442 (-) True G407344
CI01000299_03492360_03492614.mRNA mRNA downstream 635859 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 762275 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 914700 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 1022618 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 1071715 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_04136702_04142005.mRNA mRNA upstream 5600 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 28781 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 41929 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 55747 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 98300 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
TU465509 other downstream 2110953 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2248015 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2469003 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3053112 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 3456147 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 11898 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 346774 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 796748 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1312117 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1689349 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile