RNA id: TU468741


Basic Information

Item Value
RNA id TU468741
length 866
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G407946
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6452795 ~ 6453660 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATTTGACATTATAATATTTGACATTCATTTCTCCGCTGTTGTTTTTGCAAGTCTTATCCTCATTTATTCAAGGAACACAAAGCAGAATTTACAGTACTATATGAAAAGCCTGAAGAATGTGGGAAAAAAGTGAAAAATGAAGGGCTTAAAGACCACGAGGAATTCAGAGACAAGCATGCAGATCTTCACGCAGGAAAATAGAGAAGAGGGAGTGGGTGTGTGGAGTGTAATGCGCTGTAGATCGTGCAGTGGATCATGCAGTAGATCGCGTGCAGAGGTCAAATGGCATCTGGAATGGAGTTTGTGTCTTACTGTCTCGGCTGCTGCTAAGCGTCTGAGACGGGTTGAACTGAGCGAGCTGCTTCTCCACGTACTGCAGCACCTTCAGAGAGCTCTGATCTGACACCGACTGCAGATGGAAACCACTCTGCACTACAGAAGATACATCATGTGTGTGTGTTGTAAGAATATTGTTTTTGGTAATTCGGGAAACAGACTATGTTAAAACAGTCCTGTATTCTGATGAAAACCTATTTTTTTCAACCAACATATAAACCACAATTATATTTTATACTATAGTTTTTTAGTGGCCCATTCTAAAAACCTGCTTGTGGGAGAATATGTGGACTAATATTGAATGTTAAATCATAATATTACTTTGGAGGTTCATGTTAATATAATCACATGTTAATATAATCCTTGAATATAGGTGAAATTAAACATATTTGGCTCGCTGCCCATAATAGAGGCTTGAGCATGACTCGATCTGAGCTCTAAGAACCGTCAGAACGCATTTGAAAGAGTGAGAGTAAGAAGCGCTTTATATTTGCTCACTCTATCATTGTGATCAGTTGAATTACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468743 lncRNA downstream 1417 6450662 ~ 6451378 (-) True G407948
TU468812 lncRNA downstream 10019 6442473 ~ 6442776 (-) True G408013
TU468810 lncRNA downstream 11164 6441341 ~ 6441631 (-) True G408011
TU468809 lncRNA downstream 12325 6440247 ~ 6440470 (-) True G408010
TU468808 lncRNA downstream 13059 6439521 ~ 6439736 (-) True G408009
TU468717 lncRNA upstream 433 6454093 ~ 6457229 (-) True G407922
TU468732 lncRNA upstream 5119 6458779 ~ 6459120 (-) True G407937
TU468719 lncRNA upstream 8797 6462457 ~ 6465185 (-) True G407924
TU468820 lncRNA upstream 35777 6489437 ~ 6489704 (-) True G408021
TU468821 lncRNA upstream 37527 6491187 ~ 6491512 (-) True G408022
CI01000299_06362136_06376918.mRNA mRNA downstream 75560 6362004 ~ 6377235 (-) True CI01000299_06362136_06376918
CI01000299_06352251_06359190.mRNA mRNA downstream 92592 6351435 ~ 6360203 (-) True CI01000299_06352251_06359190
CI01000299_06337727_06341840.mRNA mRNA downstream 110955 6337139 ~ 6341840 (-) True CI01000299_06337727_06341840
CI01000299_06320613_06321046.mRNA mRNA downstream 131749 6320564 ~ 6321046 (-) True CI01000299_06320613_06321046
CI01000299_06310939_06311125.mRNA mRNA downstream 141566 6310939 ~ 6311229 (-) True CI01000299_06310939_06311125
CI01000299_06476844_06477950.mRNA mRNA upstream 22323 6475983 ~ 6479549 (-) True CI01000299_06476844_06477950
CI01000299_06497414_06502931.mRNA mRNA upstream 43496 6497156 ~ 6502931 (-) True CI01000299_06497414_06502931
CI01000299_06505676_06510021.mRNA mRNA upstream 51897 6505557 ~ 6510144 (-) True CI01000299_06505676_06510021
CI01000299_06516832_06521405.mRNA mRNA upstream 62935 6516595 ~ 6521405 (-) True CI01000299_06516832_06521405
CI01000299_06522084_06525262.mRNA mRNA upstream 68308 6521968 ~ 6525262 (-) True CI01000299_06522084_06525262
TU468578 other downstream 528662 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 616806 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 996687 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1523977 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1902074 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 78341 6532144 ~ 6534655 (-) True G407899

Expression Profile