RNA id: TCONS_00021691


Basic Information

Item Value
RNA id TCONS_00021691
length 957
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_009786
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14461262 ~ 14493478 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCATTGACAGCTTTTTCAAAAATGGCTATTTGTACAGTCCTGTAACAGGTCTTCAACCCTATTGAATtacaataaaacacacctgaagcagctgatTGATCTTTGCAGCGTTGTTATAAAAGGGTCTGAATGGAAATAAGGTCGgcaataaaatttaaatgagACTGGACATGCTGGACAAGGGCCAAAATCCTCTGCAGTATATGCTGATGTGATAACTACAGTTATCTACTTCCTTGCATATTCAGtgtcttttttatatatgtatattttgtgATACCAATAGCTGTCTGTGCATATATAAGTGAAACACACCAGGTCACAAATCAACTTGTGAAAGCTCCAGCAAGGATCGAGTTGACCGGACACAAATACGGCGGTTCTCACTATGATTCCAAAAACGCTGTTATTCATGGTCCTCTTGACCCTTGAATTGAACACTTGTCTGAGTCAGCCCTGCGAAGAAACCCAGAACCAGAATCGCTACGATACTTTCCTTCACCGTCACCTTCATAACAATATACCGCAGACAAAAGATGACATGAGTGCATGGCAGAAGTTTGTTGACAAAATTGACACATGGGACAGGGGAGttcaatcattttttttcccCAGTGAAGCGAACAATGTAATCGCTGTCTGTTCAACAGGAGGCAAAAAACATCAAGGCAACCTCTGCATCAGCAAGAAGCCTCTGTCGTACTTCACTGTTAAGGTCAACGAGAAGAAGCAGGTCAAAAAAGTCAAACCTTTTCTTGACCATCATGTTATTCTTGCCTGTGAAACATTTCGAAGTGAAAACAAATGTCTACCAGTTCATTTTGaggcaaatgtaaataatgttaaacCAGACAATAACAAAGAAGACTGCAGTTAAAGCAATGGTAGATACATGTTTTATGCTTTTTGAGGATCTGTAGACACATGGCCTCCAAATCTGTGATGTTCGCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019569 lncRNA upstream 240911 14216783 ~ 14220351 (+) True XLOC_009784
TCONS_00019567 lncRNA upstream 248767 14209116 ~ 14212495 (+) True XLOC_009783
TCONS_00021904 lncRNA upstream 302537 14153990 ~ 14158725 (+) True XLOC_009782
TCONS_00021903 lncRNA upstream 369417 14088371 ~ 14091845 (+) True XLOC_009781
TCONS_00019559 lncRNA upstream 449666 14010172 ~ 14011596 (+) False XLOC_009779
TCONS_00019573 lncRNA downstream 12326 14505804 ~ 14508200 (+) True XLOC_009789
TCONS_00021694 lncRNA downstream 129046 14622524 ~ 14622765 (+) True XLOC_009791
TCONS_00021695 lncRNA downstream 144567 14638045 ~ 14638290 (+) True XLOC_009792
TCONS_00021696 lncRNA downstream 147521 14640999 ~ 14641398 (+) True XLOC_009793
TCONS_00021697 lncRNA downstream 404493 14897971 ~ 14898281 (+) True XLOC_009795
TCONS_00019570 mRNA upstream 180662 14249546 ~ 14280600 (+) True XLOC_009785
TCONS_00019568 mRNA upstream 229950 14216581 ~ 14231312 (+) False XLOC_009784
TCONS_00019566 mRNA upstream 245645 14201401 ~ 14215617 (+) False XLOC_009783
TCONS_00019564 mRNA upstream 371793 14078748 ~ 14089469 (+) False XLOC_009781
TCONS_00019565 mRNA upstream 372479 14078751 ~ 14088783 (+) False XLOC_009781
TCONS_00019574 mRNA downstream 94663 14588141 ~ 14671268 (+) False XLOC_009790
TCONS_00019575 mRNA downstream 94670 14588148 ~ 14675907 (+) False XLOC_009790
TCONS_00019576 mRNA downstream 94671 14588149 ~ 14602419 (+) True XLOC_009790
TCONS_00019577 mRNA downstream 191438 14684916 ~ 14744309 (+) False XLOC_009794
TCONS_00019578 mRNA downstream 214482 14707960 ~ 14800345 (+) False XLOC_009794
TCONS_00019534 other upstream 1019629 13424548 ~ 13441633 (+) False XLOC_009767
TCONS_00019535 other upstream 1019667 13424551 ~ 13441595 (+) False XLOC_009767
TCONS_00019518 other upstream 2080416 12380730 ~ 12380846 (+) True XLOC_009756
TCONS_00019517 other upstream 2160976 12300169 ~ 12300286 (+) True XLOC_009755
TCONS_00019511 other upstream 2215366 12241490 ~ 12245896 (+) False XLOC_009752
TCONS_00019585 other downstream 1372746 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019587 other downstream 1660846 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019609 other downstream 3023470 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019610 other downstream 3077332 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019630 other downstream 4571867 19065345 ~ 19128471 (+) False XLOC_009830

Expression Profile

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