RNA id: TCONS_00019632


Basic Information

Item Value
RNA id TCONS_00019632
length 2045
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_009834
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19536614 ~ 19538776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACACCTCTAAAAAAACAGTGCTCtgattcataaatataaaaagatcCTCTGAGGAGGGCACTTTTGTGATGGCAACTTCACTTCTAGGGGTGAGTCTAAGGAGTTTCGTGCTGGTTTAATTAGTTTCCTTTATTGTCCTGCAGTGGGGATTAAAATTTCTTTGGTCAGCCGGGGAGAGAGTCACTTGATTATGTTTTAAGCGAGAGAAAGGAGCAGGAGTTGCATTTCTCAACTACGACATTGTATGTATAACACATATTGCTATTTCTATGCTGCGTTTTCGCTTTTGTGTTGCGTGTGCAATTGGCTGTTTCAGTTGACTGTTCTTCGCTACCATTCTTCAGGAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTGGTGGGACGTGGGAGCCGGTTGGATTGATGTGCAGAACCCGAATGGAGCTGCGCTCCAGACGTCCCTACACTCCGGTGGGCTGCAAACTTCTTTACACTCTCCTCTGGGCGGATACAACTCAGACTACTCGAGTTTAAGCCACTCTGCCTTCAGTACCAGCGCGTCCCCGCATCTCCTCACCACCGGGCAGCACCTCATGGACGGATTCAAACCGGTTCTCTCGTCTTACCCGGACTCCAGTCCTTCTCCTCTGGGTGGAGCGGGTGGTTCCATGTTGACAGGGGGTCCGACGGCCTCTTTGGCGGGGTCCCCGCGGTCTTCCGCGCGGCGCTACTCGGGCAGAGCGACGTGCGACTGTCCGAACTGTCAAGAAGCTGAGCGGCTGGGTCCGGCCGGCGCAAGCCTCCGCAGAAAGGGGCTGCACAGCTGTCACATCCCTGGCTGTGGGAAAGTGTACGGCAAAACGTCTCACCTCAAGGCTCATTTGAGGTGGCACACCGGGGAAAGGCCGTTTGTGTGTAACTGGTTATTCTGTGGAAAGAGGTTCACGCGCTCCGACGAGCTCCAGCGACATTTACGCACGCACACTGGCGAGAAGCGCTTCGCTTGTCCCGTGTGCAACAAGCGCTTCATGCGGAGTGACCACCTCAGTAAACATGTCAAAACGCACAGTGCTGGGGGCTCGTCAGGGTCGGGGTCTGGGGCGAGTGGAGGGAAACGAGGGAGTGACACCGACAGCGAGCACAGTGTGCCCGGTAGCCCCTCATGCCATTCGCCTGACCTGTTGCAAGCCCCCGAGTCTGTCCCGACCACTGGAATGAACGGCCGTGCAAGCTCCCTCGATTAATCCCGCTCTAAATGCCAAGCTCGAATGGACTAGTAACGTATTTGACGCCTCAGAAAATGTACTGTTCGCTCGGAAACACTTTCTAAAAACTTTCAAgttaacaaaaaatctaaaatgttttgcAAGTTTCCGATTAATGCACATTCAAATATGAATAACCTACATGAAACAACATGAACCAAAGTTTCATTTCTTTTTAACTAGTTGAATGTACATTAATGAATGTTAATTAGgcctatattttttttgttaacagttaaagttattataaagtgtcacCTGAGAAGGAACCGTGTGGCCATTTCACGTGGATGTTGTAAAGTGATTCAGtttacaattaaaatgtaattac

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0030326 embryonic limb morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3654 Enables double-stranded DNA binding activity. Involved in embryonic limb morphogenesis. Acts upstream of or within embryonic pectoral fin morphogenesis and positive regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including apical ectodermal ridge pelvic fin bud; midbrain neural keel; nervous system; neural plate; and neural tube. Orthologous to human SP8 (Sp8 transcription factor).

Ensembl:

ensembl_id ENSDART00000112894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021917 lncRNA upstream 22623 19508738 ~ 19513991 (+) True XLOC_009833
TCONS_00021915 lncRNA upstream 124193 19375634 ~ 19412421 (+) False XLOC_009831
TCONS_00021916 lncRNA upstream 124193 19375706 ~ 19412421 (+) True XLOC_009831
TCONS_00021705 lncRNA upstream 155322 19380866 ~ 19381292 (+) True XLOC_009832
TCONS_00021914 lncRNA upstream 384814 19131365 ~ 19151800 (+) True XLOC_009830
TCONS_00019641 lncRNA downstream 147941 19686713 ~ 19715210 (+) True XLOC_009837
TCONS_00019645 lncRNA downstream 266249 19805021 ~ 19807133 (+) False XLOC_009840
TCONS_00021918 lncRNA downstream 267063 19805835 ~ 19808908 (+) False XLOC_009840
TCONS_00021706 lncRNA downstream 268312 19807084 ~ 19809073 (+) False XLOC_009840
TCONS_00021707 lncRNA downstream 269171 19807943 ~ 19809073 (+) False XLOC_009840
TCONS_00019628 mRNA upstream 384814 19029297 ~ 19151800 (+) False XLOC_009830
TCONS_00019629 mRNA upstream 385879 19033554 ~ 19150735 (+) False XLOC_009830
TCONS_00019627 mRNA upstream 449277 19029297 ~ 19087337 (+) False XLOC_009830
TCONS_00019626 mRNA upstream 513498 19014886 ~ 19023116 (+) True XLOC_009829
TCONS_00019625 mRNA upstream 518315 19013257 ~ 19018299 (+) False XLOC_009829
TCONS_00019636 mRNA downstream 98612 19637384 ~ 19646960 (+) False XLOC_009835
TCONS_00019637 mRNA downstream 98612 19637384 ~ 19658742 (+) False XLOC_009835
TCONS_00019638 mRNA downstream 98612 19637384 ~ 19677375 (+) False XLOC_009835
TCONS_00019639 mRNA downstream 98673 19637445 ~ 19644452 (+) True XLOC_009835
TCONS_00019640 mRNA downstream 138712 19677484 ~ 19681282 (+) True XLOC_009836
TCONS_00019630 other upstream 408143 19065345 ~ 19128471 (+) False XLOC_009830
TCONS_00019610 other upstream 1965680 17570810 ~ 17570934 (+) True XLOC_009818
TCONS_00019609 other upstream 2019532 17516948 ~ 17517082 (+) True XLOC_009816
TCONS_00019587 other upstream 3382156 16154324 ~ 16154458 (+) True XLOC_009803
TCONS_00019585 other upstream 3669449 15866224 ~ 15867165 (+) True XLOC_009800
TCONS_00019642 other downstream 165652 19704424 ~ 19704538 (+) True XLOC_009838
TCONS_00019651 other downstream 629062 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019655 other downstream 758051 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019658 other downstream 958001 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019667 other downstream 1374641 20913413 ~ 20913484 (+) True XLOC_009854

Expression Profile

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