RNA id: TU488972


Basic Information

Item Value
RNA id TU488972
length 1399
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G425812
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12591256 ~ 12593865 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATAGCACTGCTGACCGACGCACCCATCTCACCTGTTGACTCTCTCGTTGTGCTGTCACTATCTTTGCTGTTTTCAGTTCCTTTTCAAATTTTTGAACAGATATTTTTGCTTTGCTTCTGTTAATTTTTTAATCTCCATATTTATATAACTTTTCTTTAGTTTAAATTAGTTCTCTTTTTTTTTTTGATACGTCAAGCTCCAAAAACATGGACTCCCACGAGGAATAACTTAAGGTGGAACCACGCTTTCCTCTTCCCCCTTTTTTTTTTAATAGAAAACTACCCTGTATGGTGAGAATTTTTTTTTTAATGAATAAAGTGCACTTCCTTCCGCTGTCCAGAGGGGGCACTCCAAAGATTCGGTGCTGACTGGTTGTAACAGCAACTCCATGTGGAAGGATTGTGTCTTCCAGTGGAGCTGCTGTTGCGTGCAGATAGTCACCTTTATCTGCCTTGTTTCTACATCACTGCTTCTTTTAAGTGAACAAAGAATATAAAGTCCTAATGTTTTTTATTCTGATTTAATTTAACACTTAATATTTGACTGCAATTGTACATCTATACTAGCAGAAAGCATGTTTAACCCAGGGTCTAGGACACAGGATGATGACCTATGAATTGACAGCCAGTGTTTGCAGTCCAGCTGCCTGTCAGTTCTGTAGGCCACTGTCCTGTTTGTCCTACTAAACACACACTGATTTGCACAGAGAATGCAGGACACTGTATAAATCTTATGTATAAATGTTGGGATAAATAAACGTAAAACCTTAATTTAAAGGTTAAGTTTTTTTGGGAACATGTATGTATTTATTTTGATGTTGCTAACTGTTAAAACATGAGTTATATTGATTTAATTACTGTAATTTCATTTGAACGTTCAATTATTTTTAAATCGTATTTTTTTTTTAAATATTAAATGTATCTTTTACAAGTTTTCACACTGTTTTCATCATATACATATTTCTTATGTTTTTTTGTCATATTCTTTGCATACATTTCATATAAAAAATTTTTACACAGTTTTTCAAAATCAATGTTGTCATGACTTAAGGCTCATTCACACCAACGATAACAATAAAGATATTTACAATAACTATATTAGCGTCCACATCAACACAAGATAATATACAGGTTACGTCTCAATCAGCTCCCTAGCTTCCCTAGGTTATGAATCAGTATATCGTGTACACGAATTCAGGCACTGGTAAGGACTGAAAGGACCCTGGCTCACTACACATTGGGACACTGAAGACTCTATTTCCGGCGACATGAACAACATCACTACTGGTATTTATGAACAACAGCAGAACTAATATCTTTCTGACATTATGATTTAATGTTATTTAAAGTACATTATGATAAATACTTTTCTTGTTACATATACGTGCAACATTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488876 lncRNA upstream 1468 12588921 ~ 12589788 (+) True CI01000304_12583384_12588591
TU488950 lncRNA upstream 29831 12561074 ~ 12561425 (+) True G425796
TU488930 lncRNA upstream 135403 12455493 ~ 12455853 (+) True G425778
TU488929 lncRNA upstream 135861 12455181 ~ 12455395 (+) True G425777
TU488915 lncRNA upstream 288530 12302340 ~ 12302726 (+) True G425764
TU488992 lncRNA downstream 90792 12684657 ~ 12684926 (+) True G425830
TU488978 lncRNA downstream 92263 12686128 ~ 12688600 (+) True G425816
TU488979 lncRNA downstream 94984 12688849 ~ 12689076 (+) True G425817
TU488993 lncRNA downstream 95569 12689434 ~ 12689765 (+) True G425831
TU488994 lncRNA downstream 96564 12690429 ~ 12691062 (+) True G425832
CI01000304_12583384_12588591.mRNA mRNA upstream 2192 12583384 ~ 12589064 (+) False CI01000304_12583384_12588591
CI01000304_12569155_12569469.mRNA mRNA upstream 21522 12569155 ~ 12569734 (+) True CI01000304_12569155_12569469
CI01000304_12556446_12557806.mRNA mRNA upstream 33180 12556446 ~ 12558076 (+) True CI01000304_12556446_12557806
CI01000304_12539537_12551905.mRNA mRNA upstream 39005 12539329 ~ 12552251 (+) True CI01000304_12539537_12551905
CI01000304_12496984_12537562.mRNA mRNA upstream 52103 12496879 ~ 12539153 (+) True CI01000304_12496984_12537562
CI01000304_12601154_12621980.mRNA mRNA downstream 6971 12600836 ~ 12621993 (+) True CI01000304_12601154_12621980
CI01000304_12653236_12670625.mRNA mRNA downstream 58972 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_12718988_12729338.mRNA mRNA downstream 124902 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12744525_12773999.mRNA mRNA downstream 150194 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12819247_12825161.mRNA mRNA downstream 224114 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
TU488854 other upstream 152170 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 152170 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 152170 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2035552 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2398361 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 962586 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1736183 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 2355025 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 3291589 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 3489365 16083230 ~ 16083714 (+) True G428017

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005903 False 1765 lncRNA 0.35 2 NC_007121.7 27061942 ~ 27064405 (+)
rainbow trout (Oncorhynchus mykiss) TU1014906 True 1890 lncRNA 0.40 2 NC_048574.1 44228825 ~ 44240668 (+)