RNA id: TU488929


Basic Information

Item Value
RNA id TU488929
length 215
lncRNA type antisense_over
GC content 0.56
exon number 1
gene id G425777
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12455181 ~ 12455395 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTTTTTTCAGGTCTGTCAGTACCTGCAGCTGGGGTGTGAGTATTGCTTCAAACTCCAGACTGAGGAAGTCCGGGTTAGACCGCAGGACTGAGGGCGCCGTCTCCATCAGTTTCTCAATGTCCCGCAGGGCTGCCTGCGCCCCCTCTTTGGACTGAAACTTATCCAGCAGCTGGTTAGCCAGCAGATAGGCCCCCTCATCACACCAACGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488915 lncRNA upstream 152455 12302340 ~ 12302726 (+) True G425764
TU488916 lncRNA upstream 154559 12300413 ~ 12300622 (+) True G425765
TU488779 lncRNA upstream 197987 12255099 ~ 12257194 (+) True G425666
TU488771 lncRNA upstream 281122 12172882 ~ 12174059 (+) True G425660
TU488745 lncRNA upstream 338815 12111311 ~ 12116366 (+) True G425635
TU488930 lncRNA downstream 98 12455493 ~ 12455853 (+) True G425778
TU488950 lncRNA downstream 105679 12561074 ~ 12561425 (+) True G425796
TU488876 lncRNA downstream 133526 12588921 ~ 12589788 (+) True CI01000304_12583384_12588591
TU488972 lncRNA downstream 135861 12591256 ~ 12593865 (+) True G425812
TU488992 lncRNA downstream 229262 12684657 ~ 12684926 (+) True G425830
CI01000304_12437868_12439019.mRNA mRNA upstream 16162 12437658 ~ 12439019 (+) False CI01000304_12437868_12439019
CI01000304_12424217_12429262.mRNA mRNA upstream 25773 12423206 ~ 12429408 (+) False CI01000304_12424217_12429262
CI01000304_12394477_12400175.mRNA mRNA upstream 54866 12393500 ~ 12400315 (+) True CI01000304_12394477_12400175
CI01000304_12385473_12389970.mRNA mRNA upstream 64654 12385473 ~ 12390527 (+) True CI01000304_12385473_12389970
CI01000304_12375591_12385064.mRNA mRNA upstream 70061 12375591 ~ 12385120 (+) True CI01000304_12375591_12385064
CI01000304_12468041_12473615.mRNA mRNA downstream 12646 12468041 ~ 12473708 (+) True CI01000304_12468041_12473615
CI01000304_12478136_12484791.mRNA mRNA downstream 22741 12478136 ~ 12484978 (+) True CI01000304_12478136_12484791
CI01000304_12485748_12487703.mRNA mRNA downstream 30353 12485748 ~ 12487763 (+) True CI01000304_12485748_12487703
CI01000304_12489630_12490940.mRNA mRNA downstream 34187 12489582 ~ 12491500 (+) True CI01000304_12489630_12490940
CI01000304_12496984_12537562.mRNA mRNA downstream 41484 12496879 ~ 12539153 (+) True CI01000304_12496984_12537562
TU488854 other upstream 16095 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 16095 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 16095 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 1899477 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2262286 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 1101056 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1874653 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 2493495 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 3430059 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 3627835 16083230 ~ 16083714 (+) True G428017

Expression Profile