Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU492685 |
| length | 1620 |
| lncRNA type | antisense_over |
| GC content | 0.48 |
| exon number | 11 |
| gene id | G429096 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 17837246 ~ 17846459 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU492679 | lncRNA | upstream | 8920 | 17827978 ~ 17828326 (+) | True | G429094 |
| TU492540 | lncRNA | upstream | 135196 | 17701027 ~ 17702050 (+) | False | G428970 |
| TU492541 | lncRNA | upstream | 135196 | 17701762 ~ 17702050 (+) | True | G428970 |
| TU492648 | lncRNA | upstream | 148847 | 17685684 ~ 17688399 (+) | True | G429067 |
| TU492631 | lncRNA | upstream | 156958 | 17680024 ~ 17680288 (+) | True | G429051 |
| TU492693 | lncRNA | downstream | 10096 | 17856555 ~ 17860469 (+) | True | G429104 |
| TU492728 | lncRNA | downstream | 15635 | 17862094 ~ 17864035 (+) | True | G429126 |
| TU492697 | lncRNA | downstream | 174272 | 18020731 ~ 18022062 (+) | True | G429106 |
| TU492744 | lncRNA | downstream | 204112 | 18050571 ~ 18050799 (+) | True | G429142 |
| TU492723 | lncRNA | downstream | 391596 | 18238055 ~ 18238295 (+) | True | G429122 |
| CI01000304_17730196_17744401.mRNA | mRNA | upstream | 92684 | 17730093 ~ 17744562 (+) | True | CI01000304_17730196_17744401 |
| CI01000304_17712871_17719763.mRNA | mRNA | upstream | 117112 | 17712508 ~ 17720134 (+) | True | CI01000304_17712871_17719763 |
| CI01000304_17698564_17703891.mRNA | mRNA | upstream | 133211 | 17698467 ~ 17704035 (+) | False | CI01000304_17698564_17703891 |
| CI01000304_17694317_17697897.mRNA | mRNA | upstream | 139008 | 17694193 ~ 17698238 (+) | True | CI01000304_17694317_17697897 |
| CI01000304_17605385_17608254.mRNA | mRNA | upstream | 228011 | 17603489 ~ 17609235 (+) | True | CI01000304_17605385_17608254 |
| CI01000304_17903097_17911970.mRNA | mRNA | downstream | 56638 | 17903097 ~ 17912215 (+) | True | CI01000304_17903097_17911970 |
| CI01000304_17924131_17929679.mRNA | mRNA | downstream | 77309 | 17923768 ~ 17929679 (+) | True | CI01000304_17924131_17929679 |
| CI01000304_17936617_17949044.mRNA | mRNA | downstream | 90158 | 17936617 ~ 17949742 (+) | True | CI01000304_17936617_17949044 |
| CI01000304_17954672_17977093.mRNA | mRNA | downstream | 106658 | 17953117 ~ 17977761 (+) | True | CI01000304_17954672_17977093 |
| CI01000304_17980209_18006985.mRNA | mRNA | downstream | 133026 | 17979485 ~ 18007006 (+) | True | CI01000304_17980209_18006985 |
| TU492542 | other | upstream | 133150 | 17703310 ~ 17704096 (+) | True | CI01000304_17698564_17703891 |
| TU492630 | other | upstream | 152483 | 17682271 ~ 17684763 (+) | True | G429050 |
| TU491773 | other | upstream | 521646 | 17314838 ~ 17314930 (+) | True | G428289 |
| TU491628 | other | upstream | 820052 | 17010730 ~ 17017194 (+) | False | CI01000304_17009769_17023302 |
| TU491635 | other | upstream | 1075594 | 16755946 ~ 16761111 (+) | True | G428157 |
