RNA id: TU492631


Basic Information

Item Value
RNA id TU492631
length 235
lncRNA type intronic
GC content 0.48
exon number 2
gene id G429051
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17680024 ~ 17680288 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGGGATGATTGGGAAGGCCACAGTGTTTGCAGGGGTCATCATTGGGTTGATCATCTTCTGATGAAGAGGTAGAGGAGTCCGAGCTGTTCCGCTCTCGTTTTCGGTTTCTCCTTCTCTTTCTGGTCTTCTCCACCTTGTAGTCTTCATCGCTGTCATCCTCCTCCGTCTCCTCTTCATCATCTTCAGAACATTTCTTTTTACGTCTCATTCGAGACCATGGTTGTCGTTTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492544 lncRNA upstream 94534 17584008 ~ 17585490 (+) True G428972
TU492615 lncRNA upstream 114824 17564547 ~ 17565200 (+) True G429037
TU492614 lncRNA upstream 115643 17564100 ~ 17564381 (+) True G429036
TU492602 lncRNA upstream 150086 17529321 ~ 17529938 (+) True G429024
TU492598 lncRNA upstream 150327 17529321 ~ 17529697 (+) False G429024
TU492648 lncRNA downstream 5396 17685684 ~ 17688399 (+) True G429067
TU492540 lncRNA downstream 20739 17701027 ~ 17702050 (+) False G428970
TU492541 lncRNA downstream 20739 17701762 ~ 17702050 (+) True G428970
TU492679 lncRNA downstream 147690 17827978 ~ 17828326 (+) True G429094
TU492685 lncRNA downstream 156958 17837246 ~ 17846459 (+) True G429096
CI01000304_17605385_17608254.mRNA mRNA upstream 70789 17603489 ~ 17609235 (+) True CI01000304_17605385_17608254
CI01000304_17590355_17601161.mRNA mRNA upstream 78674 17590121 ~ 17601350 (+) True CI01000304_17590355_17601161
CI01000304_17586057_17586464.mRNA mRNA upstream 93069 17585848 ~ 17586955 (+) True CI01000304_17586057_17586464
CI01000304_17517199_17518206.mRNA mRNA upstream 161382 17516805 ~ 17518642 (+) False CI01000304_17517199_17518206
CI01000304_17509491_17510444.mRNA mRNA upstream 169580 17509491 ~ 17510444 (+) True CI01000304_17509491_17510444
CI01000304_17694317_17697897.mRNA mRNA downstream 13905 17694193 ~ 17698238 (+) True CI01000304_17694317_17697897
CI01000304_17698564_17703891.mRNA mRNA downstream 18179 17698467 ~ 17704035 (+) False CI01000304_17698564_17703891
CI01000304_17712871_17719763.mRNA mRNA downstream 32220 17712508 ~ 17720134 (+) True CI01000304_17712871_17719763
CI01000304_17730196_17744401.mRNA mRNA downstream 49805 17730093 ~ 17744562 (+) True CI01000304_17730196_17744401
CI01000304_17903097_17911970.mRNA mRNA downstream 222809 17903097 ~ 17912215 (+) True CI01000304_17903097_17911970
TU491773 other upstream 364424 17314838 ~ 17314930 (+) True G428289
TU491628 other upstream 662830 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491635 other upstream 918372 16755946 ~ 16761111 (+) True G428157
TU491561 other upstream 1138979 16513714 ~ 16541045 (+) True G428096
TU491458 other upstream 1596310 16083230 ~ 16083714 (+) True G428017
TU492630 other downstream 1983 17682271 ~ 17684763 (+) True G429050
TU492542 other downstream 23022 17703310 ~ 17704096 (+) True CI01000304_17698564_17703891

Expression Profile