RNA id: TCONS_00021936



Basic Information


Item Value
RNA id TCONS_00021936
length 605
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_009929
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25207618 ~ 25213978 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


cgaacacaaacagtacagccTGCTGCTGTGACTGAAATAAAGTTGAACAACAGCGatggcttaaatgagaggatctggcgaTATGCTCCTAGAAGTCTACAGGACCAGCTCTGCTTGTTTATGATGTTGTTTATTGTATGGCTCCTCATACTCGAGTTCTTCATCACACCGTATGAATCAGCCAAACTCTTTCAGAAAGGGTATTAAGATGGGGTCTTAATGAGCGTCATTCACTGGCTCTGTTGCTGGGCATCATGGGGCCACATCAATGGCTCACCAGTGACTGGCCGCAAATTATCAAGAAGAGAAGCACATCAGGGAGCTGAACGGGGAGGCTGGCAAATATAAGATTAGAGGAGATCCAGGAGATGACACCAAAGAGAAGGATGAGTGTCAAAGTCTGCGTCGAAAAAAGAGCAATGGATGGATTTAAAGCTTCATCTGATGCTTGTGCAGCCGGCGTGAAGATCATGTCATGAATGAGCAGCTGAGGTTTCGTCATGACTCAGCATGCTGTCTATCCCAGACAGAAAAAAACGACTACAAGAGGTCTTTTGGTGTTTGTTAAAGCAAAGGTTACTGATAAAAGGATTCTgtgatgaaga

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00021935 lncRNA upstream 128588 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021934 lncRNA upstream 310507 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 310507 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 365306 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021714 lncRNA upstream 633817 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021937 lncRNA downstream 5457 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 5467 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA downstream 12876 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA downstream 19975 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00021940 lncRNA downstream 330448 25544426 ~ 25550654 (+) True XLOC_009942
TCONS_00019798 mRNA upstream 6861 25196572 ~ 25200757 (+) True XLOC_009928
TCONS_00019797 mRNA upstream 19809 25184207 ~ 25187809 (+) True XLOC_009927
TCONS_00019796 mRNA upstream 26076 25171832 ~ 25181542 (+) True XLOC_009926
TCONS_00019795 mRNA upstream 37773 25163443 ~ 25169845 (+) True XLOC_009925
TCONS_00019794 mRNA upstream 44405 25137483 ~ 25163213 (+) True XLOC_009924
TCONS_00019799 mRNA downstream 31879 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019800 mRNA downstream 45335 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019802 mRNA downstream 72020 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019803 mRNA downstream 82411 25296389 ~ 25315136 (+) True XLOC_009935
TCONS_00019804 mRNA downstream 102995 25316973 ~ 25337834 (+) True XLOC_009936
TCONS_00019788 other upstream 111056 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 288661 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 309365 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 326400 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 690526 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019801 other downstream 51821 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 127438 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 127746 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1197668 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1242232 26456210 ~ 26457614 (+) False XLOC_009958

Expression Profile


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