RNA id: CI01000312_00996558_01026242.mRNA


Basic Information

Item Value
RNA id CI01000312_00996558_01026242.mRNA
length 5407
RNA type mRNA
GC content 0.48
exon number 16
gene id CI01000312_00996558_01026242
representative True

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 995114 ~ 1026242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCGGCTCTCCTTAAACTCTCACTTTGAGATTTTACTCCGACGACAGAAGAACAGGGTGGAGAATAAGATGAGGTATTCCCTAAAATACCTACATGGCTATGCATTAACTTTCTCAGATGAAGGTGTCAGAAGGGTTAAGCTGAAGAAAATTGGGGGTGGAGGGTTCGGGGAGATATATGAGGCCTACGACCTGTTGTCACGGGAGAATGTGGCTCTTAAAGTGGAATCCGCCCAACAGCCCAAACAAGTGCTAAAGATGGAGGTTGCTGTGCTAAAGAAACTACAAGGAAAGAATCATGTTTGCAAATTTATTGGATGTGGAAGAAACGACAAGTTTAATTACGTTGTCATGCAGTTGCAGGGAAGGAATCTCGCTGATCTCAGGAGGAGTCAGCCTAGAGGGACGTTCAGTATGAGCACGACTCTACGCTTGGGGAAACAGATCCTGGAGTCCATTGAAGCCATTCACTCTGTGGGCTTCCTGCACAGAGACATTAAACCTTCTAATTTTGCCATGGGACGATTGCCGTCCACCTGTAGGAAGTGTTACATGCTGGACTTTGGTTTGGCACGACAGTACACTAATACAACTGGGGAGGTGCGGCCGCCCAGGACGGTGGCTGGGTTCAGAGGAACAGTACGCTACGCTTCGATTAACGCTCATAAAAACAAGGAAATGGGTCGTCATGATGATTTGTGGTCGTTGTTTTATATGCTGGTAGAGTTTACTGTTGGACAGTTACCATGGCGAAAGATAAAAGATAAGGAGCAGGTGGGACAGATTAAAGAGCGGTATGAGCACAGGATGCTGTTGAAACACATGCCCGCTGAGTTTCATGTCTTCTATGACCATGTGCTGGATTTAGAATACTACACCAAACCTGATTATGAGTTACTAATGTCAGTATTTGAGAACAGCATGAAAGAGAGGGTGATAACAGAAAATGAGCCATATGACTGGGAAAAATCTGGAACAGATACGTCCCTCCCCACCAGCACACACACACCACCACAACAAAACACACGGCAAACTGCTGCCATCGTGGGGATGGTGAATGTGACACCGGTACCTGGTGAATTACCGAGGGAAAACACTGATGATGTTCTGCAAGATGAACACCTGAGTGACCAAGAGAACGCCCCACCTGCTTTGATACCCAGCAGGCCTAGCGAACCTGCTCCAGCCCCACCTGTTGGGGAAGGATGGGATGAAACGGACTTCAATCGTAACAAACTCAGGATCAGCATCAGTAAGACGCAAGTAGCATCAGAGGATGGGGAGGAGCCTGCAGGAGGAGGGAGGTCAGTTTCCCCAGCAAGGGGTGGAGAAGCAGATGCTCAGGCCCGCCCTCCAAGGTACCGGAGAGTAAACAGCCCAGAATCAGACCGCCTGTCTGCTGCAGAGGATAGAGGAGATGGTGGAGATAAACGCTCTCGTTTGGACATGCTGGGTTCTCCATCCAGGCATGTCTATTCTTCCCAGCCTGCTCAGATGCTCTCTTTAGATGCTGGACAGGGAGAAAGACTGGCTGGTGGCCGCCATGATGTCTCTGCAGACGGTGACCAGGAGGCCCACAGCAATGCCTTTATCCGCTCAGTCCCGCTGGCAGAAGAAGAGGACTTTGACAGCAGGGAGTGGGTGATGATTGATAAAGAAACAGAGTTGAAAGACTTCCATCCTGGGGCAGAGCCCACCACCTCAGGCACCACAGATGAGGAACCAGAGGAATTACGCCCCCTTGAGGACCATGAGGAGAGAAGAAGGAGAGGAGGAGTGCACGGGATGGGTGGAGCTGAGGCTGTGGTACGACCCAAAACTCAACGTGGGATGATGATTGTAGCAGAGGAGGAGGGGGCGGGACCGAGCCCCATCCATTCACCTTGTCACACGTTGCCTCATACCTGCCCAAGAAGGAGGGAGTCGGAGCCGTTTGGACCTGATGGACCGTTGGAGGAGGACAGGCCACACCCACATCACTCATTCCCGAGGCCCGCCCATTTGAGAAGACTGGCGTCGTACGTGTTTTCCTCCGCTACCATGGACACGGAGCACTTCCCCCACGACCCCGCCCTCGGGGCAGCGGCCATTCAGCGCAGCCGCTCAGCTGAAAGCAGCCCCGCCCACCGTCACGCCCATCGCAGACACATGCCCCTGTTGCCAGGGAACCCCAGAGCCCGGCATTCTGAGATCGCAGTGGCTGAACCTTCACCGTCTTCCTCTCAGACGCGTATGAAGCGAGTCGACTTTGTGTCTGGTGTGTTGATGTTTGACGATCTGAGAGAGGAGGGTGGAAAGACTGGAGGTTCTGGCAGTGACGGAAGCCCTCGCAGTAGTGAGGGAAGCCCAGAGGGTGCTGTGTCTACCCTACTCGCACCTGCCCAACGGGAACACGACCAGGAAGAGGGCTCACGCACGCTGGTGCTTGTGTCTGCCGGTAACGGGCAGGTATCACCTGGAGACGGGCAGGGAACACTGGCCGCATTGACACCGCAGGGAGAGCGGCCCGTGCCGGATGAATCCGAACCTGGGACTCTCTCCTCTGTTATTAAGTCTGAACCCAGGCCTATCGTCATGACATCTGCAGCCGTAATCACCAGCGGTTCTTGCTCACCGCCGTTCACCAAGGTGGAACGCACTTTCATCCACATTGCTGAGACGTCACATCTCAATGTCATGACAGCCAGACACCGGCCGCCTGGAATGGATGAGCTGATATCTAATGAGCGTGAGGAGACTAGTGCAGAGAAAGAGGAGAGGGAAGTGGTCAGTGAACGAGAGCAAAAGGAGAGCAAAAGTGAAAGTATTACAGTAGAAAGGGTAGGGGATGAGAGGAAAAAGGAAGAAAGTGAAGCTGAGAATGGCAGACAGGCTGAAGAAAAAGTAAATAAAAGTGTCAGAGAGGAACCAGAGGCTGTGTTTTTAGCTGAGCCACATGACCAGCCAGAGACTACAGCTATTGAGGAAGAAGTCTCCAGAGAAACCAAAATAGAAGGTGGACCAGGTGTTGTTGTGCCAGAAGTAGACCTGCAAAGGGAACAGGAGCAGGAAGAGTGTCCATCTCTCACCCCTGAACAAAACAGAGATGCAGAGGTGGAGGATGAGAAGGACATGTCTCCACCAGAGGTGGAGTCACCCAGTAGAAAGCCACTCCCACAGAGGCGGAGCCGTATTCCTGTGCTTATGTCGGAGGAGGAAACGGGCTCAGACAAGTCATCACAGACGAGTCAGGAGCAGTTGCAGCGAACTCGCAAAAGCCGACAACAACAGCTGGCCCGCCTTGTTTTGGAGCGTAAACAAACACACCTGATTCGTTCTCGCTCCGCCTCCTCGCACTCCCCGACACTCTCCACCACTGCATCTGAGGATGAAGCCCACCAATCAGACGACTCTGCGAGAGGAGAGAGAGGAGCAGATGGAAGAATTAAGAGCAGAATCCCTCGGCCAGTCACACCCATCAGGGGGTCTTCTGACCAACTGGGGGACACGACCGTCCCACAAACCCAGAGATCTGTGTCTTTCATTCAATACAGAACCAACAGTTTTGTCAATCCAAGGATTCAAAAGTCTGCAAGTCTGCACACAAATATCCATCAGCAGCCGCCTAAACCTCAGCTCCGCCCCTCTAAAACACTTCCACCCCGTCCTCCATCTTCAGGCCCCTCCCACTCGCAGGGAAGTCGGACCGCCACACGTACCATTACTCGTACTTTAACTCTTAATGCCACCCGAAGCATTAGCACCTCCCCTCGGGGCCACGCCTCCTCTCGCACCGACAGCCCCTCGCCTCAGCGCATTCGCCGACAGCCTGCATCCACTGAAACACAGCCCAGACCTCCTTGCCCGTCTCAGTCCAAATCCAAACCTCAGGACTCCACCCCCAAAAAGAGCAAAACCCACCCATCAACCTCATCGCAAAAAGCAAAGAAAGATCCACCAGAGTCAAAGACTAAAAAGAGATAATTATAATGCATTGAAGGACTTCATTCGTCCAGATGATCTTCATCCTCAGCATTATCATCATCATCACAATCATCAGTGTTGGACTGTACCTCGCATGACACACAAGAGAATGGATGGACGTGTTTGTTATTCAGCCAAGTGACTGCAGCAGCTACTTAAATACCTCTGATGAGGAGAACCTCTGACATTTATACACACAGTGAGTGTACAAAACTGTGTGCGGGCGAGTTGTCATTAATGAAGTGTGTTGGACAGATGAACACACCTCATATGCCTTAAACCTGCAAAGGAAATAATTGCTGCCATCACAACAAAGCTTCCACAGGCTCTATCCTCTTAATGCCACTGTCATGTTCAATAACACAACCAATCACATTGTACAAGTTAGAATCGGGTTTTACTGCAGCTTTAAAGCTTTTAAATACATTACGGAACATTGTCATTTATTTTAATTGAATATCACTTCCCAAACCATTTTTTTTTTTTTTTTTGACTAAAATTACATGATCAGAATCTGGAAAAAAGATAGCTTTATTTAAACTTACAAAAACCTAAAATGTATCAAAAGTCCCAAATGTACTGATTACTCAACTAGTTGGTGTTTGGGACAGCCTTTTATATCAACTTCTGCTGCCAATTACTGTGTGCTAAAATTTGTATTTATCTCAAACATATTAATAATAATAAGAGTCATATGCTCCTAAACTTGGTGGTTCTGTGCAGAACATGCTGACAAAAATGCGATATGGTACATAAATCTGGTATTAATACCTAAATTTAATATCTACACAGAACTAAGATGACTAATGTTGCTGCTACAGTTTGATGTCAATCATATACTCATCTTGGCCCTGCCCACTGTCTGTGTTTCTCTCTCTGATTGGGTCAATCCATCCGTGACACTCGTCTGCTAAATTTATTTATAACCGGATCAGCGGTATGCATTTGAAAATGCTCATCCGCTTCTGTTTATTGTCTTTTGCAAAACTGTAGATAATGTAAGCAGTACTTTTGAAAAACAAATTTATATTTTTGTTCCAAAAAACAAAAGATTAATGGATGAAAATAGGACTAACTTAGTTGCATTTTTCTCAGTCTCAGACTGAAAATGCACCATTCTGATCTGTATGCAACTTTCACAGTTCAAAGAACACTGGAGGAAGCTGAATGAAGGTCAAAGAGAACATCAAAGCTTCTCAAAAATCAGACACACCAAGGAGAATTAAGCAGCAGGAACCAATAATGTGTGTTGAAGCAGCATGTCTGGGGTTTGTACTCTAAGATGTTATTTTTATGCAGTACTGCTACTCCTGAGTGTCCACAGCATGTGTTCAAAGGTCGGTAATCTGACATAGAATTTAAATGATGCTAAGGTGCTATAAGAGTTTTTCTTCATGCCTGCTCTAGTTATTGGTGTTTTTTCCCGTCCTGTGCTTGGAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08815 TTBK; tau tubulin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509710 lncRNA downstream 39174 955723 ~ 955940 (-) True G444019
TU509636 lncRNA downstream 103243 891066 ~ 891871 (-) True G443953
TU509691 lncRNA downstream 109066 885812 ~ 886048 (-) True G444003
TU509690 lncRNA downstream 110143 884709 ~ 884971 (-) True G444002
TU509689 lncRNA downstream 112955 881368 ~ 882159 (-) True CI01000312_00878228_00881714
CI01000312_00982855_00990039.mRNA mRNA downstream 5075 982548 ~ 990039 (-) True CI01000312_00982855_00990039
CI01000312_00969873_00976978.mRNA mRNA downstream 18015 969810 ~ 977099 (-) True CI01000312_00969873_00976978
CI01000312_00964529_00968018.mRNA mRNA downstream 25392 964464 ~ 969722 (-) True CI01000312_00964529_00968018
CI01000312_00954156_00962879.mRNA mRNA downstream 32142 954079 ~ 962972 (-) True CI01000312_00954156_00962879
CI01000312_00878228_00881714.mRNA mRNA downstream 113400 878071 ~ 881714 (-) False CI01000312_00878228_00881714
TU509688 other downstream 111424 882416 ~ 883690 (-) True G444000
TU509607 other downstream 259301 735468 ~ 735813 (-) True G443927
TU509534 other downstream 386942 604085 ~ 608172 (-) True G443871

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023825 True 2016 mRNA 0.52 12 NC_007128.7 22044301 ~ 22062364 (-)
mexican tetra (Astyanax mexicanus) TU105771 True 1935 lncRNA 0.41 3 NC_035905.1 6812532 ~ 6814574 (+)