RNA id: TU509710


Basic Information

Item Value
RNA id TU509710
length 218
lncRNA type intronic
GC content 0.37
exon number 1
gene id G444019
representative True

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 955723 ~ 955940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATATCACACGAACACGAGTCCTGTTGTTCTCGAATAACTAAGCACGATTGCTTTTATACAACAGATACTTAAATAACAAGAGTTAAGTTTGCATTACATTTTAGACATAATATTGACAGTTACAGTACCTTGTCTGCTTTTTGCTCTGCCAACGAAAACTGTTACAAACAAAGCTACAGCGAAATGTTGCGAAATGTTGCGCACATACACAGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509636 lncRNA downstream 63852 891066 ~ 891871 (-) True G443953
TU509691 lncRNA downstream 69675 885812 ~ 886048 (-) True G444003
TU509690 lncRNA downstream 70752 884709 ~ 884971 (-) True G444002
TU509689 lncRNA downstream 73564 881368 ~ 882159 (-) True CI01000312_00878228_00881714
TU509660 lncRNA downstream 107153 848415 ~ 848570 (-) True G443977
CI01000312_00878228_00881714.mRNA mRNA downstream 74009 878071 ~ 881714 (-) False CI01000312_00878228_00881714
CI01000312_00849493_00850764.mRNA mRNA downstream 104544 848816 ~ 851179 (-) True CI01000312_00849493_00850764
CI01000312_00840984_00842545.mRNA mRNA downstream 112680 840682 ~ 843043 (-) True CI01000312_00840984_00842545
CI01000312_00720528_00726895.mRNA mRNA downstream 228535 719177 ~ 727188 (-) True CI01000312_00720528_00726895
CI01000312_00642862_00646991.mRNA mRNA downstream 307791 641824 ~ 647932 (-) True CI01000312_00642862_00646991
CI01000312_00964529_00968018.mRNA mRNA upstream 8524 964464 ~ 969722 (-) True CI01000312_00964529_00968018
CI01000312_00969873_00976978.mRNA mRNA upstream 13870 969810 ~ 977099 (-) True CI01000312_00969873_00976978
CI01000312_00982855_00990039.mRNA mRNA upstream 26608 982548 ~ 990039 (-) True CI01000312_00982855_00990039
CI01000312_00996558_01026242.mRNA mRNA upstream 39174 995114 ~ 1026242 (-) True CI01000312_00996558_01026242
TU509688 other downstream 72033 882416 ~ 883690 (-) True G444000
TU509607 other downstream 219910 735468 ~ 735813 (-) True G443927
TU509534 other downstream 347551 604085 ~ 608172 (-) True G443871

Expression Profile