RNA id: CI01000312_00849493_00850764.mRNA


Basic Information

Item Value
RNA id CI01000312_00849493_00850764.mRNA
length 1983
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000312_00849493_00850764
representative True

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 848816 ~ 851179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGCCAACGCGAAGAGTCTGGGAGGCCCCTCCTCTCTCCCGACTCTCCACTTCCCATCTCTCCCTTCATCCCATTTGCTATTGTACGTGCCCAATCGCCGTATACTTTCTGCATTTAACTCGGGTGACATTTTTATTTCATCATTAGCATCTGGCGCCAGACGGACGCGGTGAGCATCATTTTCACCAAGGAACTCTCGGAAGATGATCAGCAAGATTAATATTGTTTATCTCGCCCCGCGTTATTGTCTTTCGTTTTAACGTCAGTGCTGACCGTAAACAACCGCGCTTAAGTTCCAAATACTGGAAGAGTTTACCAAGGACCTTCAAACTGTTAAAAGATTTTTTTTTTTTTTTTAAAGATTTTTTAACAATTTTCATAAATAATATTATAACTACGAATTTCCAGCCAACATGCCCGAAACAACCCAGGATACATGTGCTTCGGCGAAAGACTCTCCGTTTTTCATTAAAAATCTTCTAAATTCTGACAGTAAGCCGTCCAAGCCTAAGCCTATGTTGGCTTCAACTAAACCAGGACTTGATGGCAGCTTCTCGCTCTCTCAGGTTGGGGAATTAAACTTTCCTCGCTTCGAGTTGCCGACCCAGCGCTTTGCGTTACCGGCTTACCTTGAGCGTGCCTCGGCGTGGTGGTACCCGTACACACTCAGTGCATCTGCGCATCTTCACAGAACAGAAGCACAGAAAGCGAGGGACTCCTCACCGAATGCAGGCACCGACCGAGACTCACCTGAGCTCGTGCTCAAATCAGACCCGGATGCCAAAGACGATGAAGACGACAACAAAAGTGGTGACGAGATTGTCCTCGAAGAGAGCGACATCGAAGATGGTAAAAAAGAAGGCGGCGTGGACGACTGGAAGAAGAACGACGACGGCGCGGACAAGAAACCTTGCCGGAAAAAGAAAACTCGCACGGTGTTTTCGAGGAGTCAGGTGTTCCAGCTGGAGTCCACCTTCGACATGAAACGCTACCTCAGCAGCTCGGAGCGCGCGGGCCTTGCTGCCTCCCTTCACCTCACAGAGACCCAAGTCAAAATCTGGTTTCAGAACCGCAGAAACAAATGGAAACGTCAGCTGGCCGCAGAGCTGGAGGCCGCCAACTTGAGCCACGCAGCAGCTCAAAGGATTGTGAGAGTACCCATCCTGTATCACGAGAACTCGTCCTCTGAGAGCTCCAACACAGCGGGCAACGTGCCCGTGAGCCAGCCGCTGCTCACTTTCCCTCATCCGGTTTACTACTCGCATCCTATCGTCACCTCCGTGCCCCTCCTCAGACCGGTTTGAGAGGACGAGAGATGCCTTTTTTATGTAACTTATGTAACTAAAACAATTTTACAGAGACTCGAAAAGAGGGAAAGAGAAAAAAAAGGCGGAAATGAAACCAAGAGACAAAGCTATTTTTGTTTAGAAAATAATTTAAAAAGAAAGAAAAGAAAATGTACAAAGACGCACTATCATGCATTTGAGCCCTAAATTTTTGTTTTACAACTCACAAATATATCCATAAAACTACACATGAATAAGGCGAATGTTTAGAGGCCTATTTCTGATGTTGGTTTGATTGGTGATGAATTACAATGACTACGTTAATTTGCTTTCATTGTTATTATTATTATTATTATTATTATCATCTATGAACATCACAAATTAACTTGTTGACACGTCAAAGAAAAGAGTTCATACACCTGGTTAAGTTTATTTATAGCACCGGGGGGGGAAAAAATCACACAGTCCTGAACACGAATGTGCAATACTACTGTGTATGATCCATATATTTAGGCAACATATTCTTTTTGAAACTCTTATTTTAGACAAATTTTCTTAACCAAACAGTTCTTAGGTTGAGAAGATAACCGCTGAAAACGATTTTGTGTCCTTGGTCCCGCGTTCAATGGACAATCATAGGCTATATCTGACAGAAATTACAGTTGAACTGAAGACACGCAAACACGAATAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509660 lncRNA downstream 246 848415 ~ 848570 (-) True G443977
TU509669 lncRNA downstream 25588 823006 ~ 823228 (-) True G443986
TU509644 lncRNA downstream 42864 805745 ~ 805952 (-) True G443961
TU509615 lncRNA downstream 94072 754522 ~ 754744 (-) True G443935
TU509612 lncRNA downstream 103292 745299 ~ 745524 (-) True G443932
TU509689 lncRNA upstream 30189 881368 ~ 882159 (-) True CI01000312_00878228_00881714
TU509690 lncRNA upstream 33530 884709 ~ 884971 (-) True G444002
TU509691 lncRNA upstream 34633 885812 ~ 886048 (-) True G444003
TU509636 lncRNA upstream 39887 891066 ~ 891871 (-) True G443953
TU509710 lncRNA upstream 104544 955723 ~ 955940 (-) True G444019
CI01000312_00840984_00842545.mRNA mRNA downstream 5773 840682 ~ 843043 (-) True CI01000312_00840984_00842545
CI01000312_00720528_00726895.mRNA mRNA downstream 121628 719177 ~ 727188 (-) True CI01000312_00720528_00726895
CI01000312_00642862_00646991.mRNA mRNA downstream 200884 641824 ~ 647932 (-) True CI01000312_00642862_00646991
CI01000312_00585354_00590552.mRNA mRNA downstream 258194 584955 ~ 590622 (-) True CI01000312_00585354_00590552
CI01000312_00562199_00564611.mRNA mRNA downstream 284205 562180 ~ 564611 (-) True CI01000312_00562199_00564611
CI01000312_00878228_00881714.mRNA mRNA upstream 26892 878071 ~ 881714 (-) False CI01000312_00878228_00881714
CI01000312_00954156_00962879.mRNA mRNA upstream 102900 954079 ~ 962972 (-) True CI01000312_00954156_00962879
CI01000312_00964529_00968018.mRNA mRNA upstream 113285 964464 ~ 969722 (-) True CI01000312_00964529_00968018
CI01000312_00969873_00976978.mRNA mRNA upstream 118631 969810 ~ 977099 (-) True CI01000312_00969873_00976978
CI01000312_00982855_00990039.mRNA mRNA upstream 131369 982548 ~ 990039 (-) True CI01000312_00982855_00990039
TU509607 other downstream 113003 735468 ~ 735813 (-) True G443927
TU509534 other downstream 240644 604085 ~ 608172 (-) True G443871
TU509688 other upstream 31237 882416 ~ 883690 (-) True G444000

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023807 True 2121 mRNA 0.41 2 NC_007128.7 21790606 ~ 21793113 (-)