RNA id: CI01000312_00954156_00962879.mRNA


Basic Information

Item Value
RNA id CI01000312_00954156_00962879.mRNA
length 1817
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000312_00954156_00962879
representative True

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 954079 ~ 962972 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTACCAACCTTTGAAATCCCATAAAGACTCAGCACATAAACCAAAAATTTTGAAAGAAGACAGAGAGGATATCTGTGCATCAAAAAAAAACATGAAGTTTGAAGATCTAATTACGGAGATCGATGGCTTCGGCAGGTTCCAAAAGATGATTATTTTCATCAGTTTTGTTGGACGATTCACTATACCGTGCCACTTTTTATTAAGCAACTTTATCGCCGCCGTCCCATCTCACCACTGTGACATTAGCTCTCTGGACGCTGAGGGAACTTTTGGGAATTTGAGTCGGGAGCAGAAACTGGCTGTCAGTATTCCAGCGCAGGAAGATGGAACTCCTGCTTCTTGTCACATGTTCCCTTATCCTCAGTTACATCTGTTGACAAACTCCTCCAGCAGCATAGATCTTCCTATAGTGGAGTGTCAGAATGGATGGGAGTATGACAACAGCACGTTCATCAGCACTCTCGCCACACAGTGGGATCTAGTATGTGATAACAGAGGTCTGAATAAAGCGGTGACCACCATCTTTTTCATCGGAGTGATGTTTGGAGCAGCTTTTTTTGGAGGCATGAGTGACAGATTTGGGCGTAAGCCAATGCTGCTGGTGTCGTATATATCAGGAATGGCTTTTACATTGGCCAGCATCTTTTCTTCCTCCTTCATCATGTTTGCAGTGCTGAGATTCTTTAGTGGATTTACTATAACTGGCATCGTTATCGTCTCATCCGTACTCAATGTGGAGTGGGTTGACATTCAGCACAGGAGACTAGTATGTCTAATTGACAGTACGGCATGGGCTTTTGGGAGCACCTCTTTGTCTCTTATTGCATTCTGTATCAGAGACTGGAGATGGCTGACAGTGGCTGTCACTTCACCTTTACTGCTCTGCACCGTCCTCTGGTGGTGGGTTCCAGAGTCGGTTCGGTGGCTGATAGCCAATGGAAAGGCAGAAAGAGCTCATTTTTATCTTCATAAATGTGCTGTCATGAATCGCAAAGAGGATGTTATCTCAAGAATCAAACCTGAGGCTCTCTCTATTATAATAACAGAACAAGGAAAGAAAAATTATTCATACCTGGACCTAGTCAAAACCCCTAAGATGAGGAGACTGGCTCTGCTCACAGGAACCATATGGTTTTGTGTTGCCATTGTAACCTATGGTATAAGCCTGAACATCACAGGCTTTGGACTAAATATATACCTCACTCAGTTTGTGTATGGAGCCATTGAGGTTCCATCTAAACTGGTTGTTTATTACCTGCTGGAGAAGATTGGCAGACGTAAAACTGAAGCAGGAGCTCATTTATTGGCTGGAATCAGTCTTATGATCAACATATTCATAACCAAAGATCAGTGGATTGGTCGTACTGTGGTGGCAGTATTGGGTAAAGGTTTCGCGGTTGCTGCTTTTTCTACAATTGTGTTATACAGCTCGGAGCTTTACCCAACTGTTCTCAGGCAAAATGGGATGGGCTACAATTCGTTCTTGGCCCGTCTGGGTGTGTCAGTGGCTCCTCTAGTCCTGCTATTGGACAGTTTCTGGGGTCACTTCTCTCAGACCATCCTGTGCTGTGCGGCACTCGTCGCTTGTCTGGTGACTTGGCAGTTACCTGAGACACGAGACAGGTGTCTGCCCGAGACTATAGAGGATGTCGAGGGTACTGGGAAAAATCTCATTAAAGATCATGACAAGCAGGACGTGGAGAAAATAAAAATGAATGAACGCACAGAGGACCACTGAGATTCATTCAGACTGATGTTCCGTTGCTTAATGTCACATTCAGATCCATTCAGACAGTAAATGCGCACAAAAATAAA

Function

GO:

id name namespace
GO:0008514 organic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509636 lncRNA downstream 62208 891066 ~ 891871 (-) True G443953
TU509691 lncRNA downstream 68031 885812 ~ 886048 (-) True G444003
TU509690 lncRNA downstream 69108 884709 ~ 884971 (-) True G444002
TU509689 lncRNA downstream 71920 881368 ~ 882159 (-) True CI01000312_00878228_00881714
TU509660 lncRNA downstream 105509 848415 ~ 848570 (-) True G443977
CI01000312_00878228_00881714.mRNA mRNA downstream 72365 878071 ~ 881714 (-) False CI01000312_00878228_00881714
CI01000312_00849493_00850764.mRNA mRNA downstream 102900 848816 ~ 851179 (-) True CI01000312_00849493_00850764
CI01000312_00840984_00842545.mRNA mRNA downstream 111036 840682 ~ 843043 (-) True CI01000312_00840984_00842545
CI01000312_00720528_00726895.mRNA mRNA downstream 226891 719177 ~ 727188 (-) True CI01000312_00720528_00726895
CI01000312_00642862_00646991.mRNA mRNA downstream 306147 641824 ~ 647932 (-) True CI01000312_00642862_00646991
CI01000312_00964529_00968018.mRNA mRNA upstream 1492 964464 ~ 969722 (-) True CI01000312_00964529_00968018
CI01000312_00969873_00976978.mRNA mRNA upstream 6838 969810 ~ 977099 (-) True CI01000312_00969873_00976978
CI01000312_00982855_00990039.mRNA mRNA upstream 19576 982548 ~ 990039 (-) True CI01000312_00982855_00990039
CI01000312_00996558_01026242.mRNA mRNA upstream 32142 995114 ~ 1026242 (-) True CI01000312_00996558_01026242
TU509688 other downstream 70389 882416 ~ 883690 (-) True G444000
TU509607 other downstream 218266 735468 ~ 735813 (-) True G443927
TU509534 other downstream 345907 604085 ~ 608172 (-) True G443871

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023815 False 1838 mRNA 0.45 10 NC_007128.7 21982617 ~ 21993707 (-)