RNA id: TU509612


Basic Information

Item Value
RNA id TU509612
length 226
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G443932
representative True

Chromosome Information

Item Value
chromosome id CI01000312
NCBI id null
chromosome length 1039935
location 745299 ~ 745524 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAACATTACTATTTTTAATGTTTTGAACAAAGTCTCTTATGCTCATTAAGGCTGCATTTATTTCATAATAAATACAGAAAAAACAATAATATTGTGAAATATTATTACAATTTAAAATTATGGTTTTCTATTTTAATATACTTTAAAACATAATTTATTTCTGTGATGCAAAGCTGAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU509611 lncRNA downstream 104 744995 ~ 745195 (-) True G443931
TU509610 lncRNA downstream 1846 743175 ~ 743453 (-) True G443930
TU509580 lncRNA downstream 40531 704560 ~ 704768 (-) True G443909
TU509579 lncRNA downstream 41066 704022 ~ 704233 (-) True G443908
TU509575 lncRNA downstream 45011 700059 ~ 700288 (-) True G443904
TU509615 lncRNA upstream 8998 754522 ~ 754744 (-) True G443935
TU509644 lncRNA upstream 60221 805745 ~ 805952 (-) True G443961
TU509669 lncRNA upstream 77482 823006 ~ 823228 (-) True G443986
TU509660 lncRNA upstream 102891 848415 ~ 848570 (-) True G443977
TU509689 lncRNA upstream 135844 881368 ~ 882159 (-) True CI01000312_00878228_00881714
CI01000312_00720528_00726895.mRNA mRNA downstream 18111 719177 ~ 727188 (-) True CI01000312_00720528_00726895
CI01000312_00642862_00646991.mRNA mRNA downstream 97367 641824 ~ 647932 (-) True CI01000312_00642862_00646991
CI01000312_00585354_00590552.mRNA mRNA downstream 154677 584955 ~ 590622 (-) True CI01000312_00585354_00590552
CI01000312_00562199_00564611.mRNA mRNA downstream 180688 562180 ~ 564611 (-) True CI01000312_00562199_00564611
CI01000312_00518402_00527302.mRNA mRNA downstream 217997 518244 ~ 527302 (-) True CI01000312_00518402_00527302
CI01000312_00840984_00842545.mRNA mRNA upstream 95158 840682 ~ 843043 (-) True CI01000312_00840984_00842545
CI01000312_00849493_00850764.mRNA mRNA upstream 103292 848816 ~ 851179 (-) True CI01000312_00849493_00850764
CI01000312_00878228_00881714.mRNA mRNA upstream 132547 878071 ~ 881714 (-) False CI01000312_00878228_00881714
CI01000312_00954156_00962879.mRNA mRNA upstream 208555 954079 ~ 962972 (-) True CI01000312_00954156_00962879
CI01000312_00964529_00968018.mRNA mRNA upstream 218940 964464 ~ 969722 (-) True CI01000312_00964529_00968018
TU509607 other downstream 9486 735468 ~ 735813 (-) True G443927
TU509534 other downstream 137127 604085 ~ 608172 (-) True G443871
TU509688 other upstream 136892 882416 ~ 883690 (-) True G444000

Expression Profile