RNA id: CI01000327_04429751_04432240.mRNA


Basic Information

Item Value
RNA id CI01000327_04429751_04432240.mRNA
length 545
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000327_04429751_04432240
representative True

Chromosome Information

Item Value
chromosome id CI01000327
NCBI id null
chromosome length 4453825
location 4429690 ~ 4432240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGTTACTGGAGCAAGTAGCTGAGTTTGAGAAGACTGATTTCAAACCCAACAGCAAGGAGATTTCCAGACTACAAGAGGACAATGACAAATTGAAAGCTAGACTCAGAACTTTGGAATCTCAGGCCATGAGCGCTCTAGATGACAAGTCCAAAGCAGAGAGGGCCTTGAAAGACCTTCAAAAAAGTCAAGGAGATCATCAGGAGATCGCAAATCTGGAAGGCACAGTTGCAGCAATGCAGGCTGACTTTGAAAAGACCCTGAATGCCAACGTTGCTTCTCAAAAAGACCTGCAGGACAGCCTGGTATCCGCTAAACATGACCTGCTTCGTGTCCAGGAGCAACTTTCCCTTGCTGAGAAGGAACTGGAAAAGAAATTTCAGCAGACGGCTGCATACCGCAACATGAAGGAGATTCTCACTAAAAAGAATGAACAGATTAAAGATCTGAGAAAGAGACTACAAAGGTATGAATCAGATGAGTGAACGTTTAACCCACAGGAAACAAATGAAGAGGTCAACTGAGGGACTTTTAATGCATATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU542136 lncRNA downstream 3272 4421909 ~ 4426418 (-) True G472437
TU542160 lncRNA downstream 52058 4377236 ~ 4377632 (-) True G472461
TU542158 lncRNA downstream 55356 4374099 ~ 4374334 (-) True G472459
TU542156 lncRNA downstream 68401 4361090 ~ 4361289 (-) True G472457
TU542154 lncRNA downstream 69692 4359625 ~ 4359998 (-) True G472455
CI01000327_04405469_04408613.mRNA mRNA downstream 21077 4405009 ~ 4408613 (-) True CI01000327_04405469_04408613
CI01000327_04315483_04319983.mRNA mRNA downstream 108963 4315369 ~ 4320727 (-) True CI01000327_04315483_04319983
CI01000327_04232877_04277027.mRNA mRNA downstream 152663 4232877 ~ 4277027 (-) True CI01000327_04232877_04277027
CI01000327_04196209_04202497.mRNA mRNA downstream 226220 4195990 ~ 4203470 (-) True CI01000327_04196209_04202497
CI01000327_04179387_04181415.mRNA mRNA downstream 248188 4177944 ~ 4181502 (-) True CI01000327_04179387_04181415
TU542169 other downstream 33260 4396090 ~ 4396430 (-) True G472470
TU541913 other downstream 647022 3781696 ~ 3782668 (-) True G472251
TU539806 other downstream 4155395 273732 ~ 274295 (-) True G470330

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045365 False 1822 mRNA 0.39 10 NC_007135.7 12133854 ~ 12253332 (+)
bowfin (Amia calva) TU46856 True 431 lncRNA 0.38 3 CM030124.1 46548815 ~ 46550555 (+)