RNA id: TU46856


Basic Information

Item Value
RNA id TU46856
length 431
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G37516
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46548815 ~ 46550555 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCGACAAGTGCATTGGATGAAAAATCCAAACTAGAAAAGGCTCTGAAAGATTTACAGAAGATTCAAGGAGACCAAAAGgagaTCACAAACCTGGAGGAAACAGTGACTGCATTGAAATCGGATTTCCAGAAGACACTCAATGCCAGTTCGGCCACCCAAAAGCACCTAGAGGACAATCTGGTTACGACCAAGCATGATCTCCTCAAAGTTCAGGAGCAGCTTGCTGTTGCTGAAAAGGAACTGGAAAAGAAATTTCAGCAGACGGCATCTTACCGTAACATGAAAGAAATACTGACCAAAAAGAATGATCAGTTAAAGGAAATAAGAAAACGCCTTTTGAAGTAAGTGGTTTACTGTATTTGCttagtatattaaaataagactttattgttaaattctgttattttgctttgtttgatacagtgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46850 lncRNA upstream 2466 46545171 ~ 46546349 (+) True G37514
TU46853 lncRNA upstream 2466 46545245 ~ 46546349 (+) False G37514
TU46812 lncRNA upstream 155717 46365327 ~ 46393098 (+) True G37486
TU46779 lncRNA upstream 567774 45980819 ~ 45981041 (+) True G37455
TU46763 lncRNA upstream 726694 45819485 ~ 45822121 (+) True G37440
TU46862 lncRNA downstream 4635 46555190 ~ 46565098 (+) False G37521
TU46863 lncRNA downstream 8607 46559162 ~ 46565098 (+) True G37521
TU46866 lncRNA downstream 21746 46572301 ~ 46572798 (+) True G37524
TU46910 lncRNA downstream 249561 46800116 ~ 46800414 (+) True G37567
TU46980 lncRNA downstream 614439 47164994 ~ 47165220 (+) True G37630
AMCG00019804 mRNA upstream 1289856 45257308 ~ 45258959 (+) True AMCG00019804
AMCG00019803 mRNA upstream 1311414 45206216 ~ 45237401 (+) True AMCG00019803
AMCG00019796 mRNA upstream 1374897 45158209 ~ 45173918 (+) True AMCG00019796
AMCG00019798 mRNA upstream 1483527 45064638 ~ 45065288 (+) True AMCG00019798
AMCG00019797 mRNA upstream 1613206 44925531 ~ 44935609 (+) True AMCG00019797
AMCG00019812 mRNA downstream 113652 46664207 ~ 46771569 (+) True AMCG00019812
AMCG00019811 mRNA downstream 272691 46823246 ~ 46836213 (+) True AMCG00019811
AMCG00019814 mRNA downstream 290893 46841448 ~ 46844186 (+) True AMCG00019814
AMCG00019810 mRNA downstream 299364 46849919 ~ 46861698 (+) True AMCG00019810
AMCG00019817 mRNA downstream 518441 47068996 ~ 47069748 (+) True AMCG00019817
TU46693 other upstream 1209196 45279455 ~ 45339619 (+) False G37372
TU46357 other upstream 2492212 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 3215502 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 3277930 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 3586157 42960656 ~ 42962658 (+) True AMCG00019755
TU46904 other downstream 240472 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 1900073 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 3007927 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 3012339 49562894 ~ 49563214 (+) True G37964
TU47369 other downstream 3020632 49571187 ~ 49571486 (+) True G37968

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045365 False 1822 mRNA 0.39 10 NC_007135.7 12133854 ~ 12253332 (+)
grasscarp (Ctenopharyngodon idella) CI01000327_04429751_04432240.mRNA True 545 mRNA 0.43 6 CI01000327 4429690 ~ 4432240 (-)