RNA id: TU46866



Basic Information


Item Value
RNA id TU46866
length 498
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G37524
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46572301 ~ 46572798 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCAACGCCATTTCGTGTTGCTaccctgtctgtttgtgtaaaatacctttgtgattgattgtttttccttgtgtaaATATCCACTGTTTCTTCTCTGTTATATTTCCGTTtacattgtattctgtattgtgCTCTGTTCAGGGGAGAACGGGTAGATAGGTGAGATACCCATGGGTTTACACGGTTACACGTAGAGATGTATGTTGTCTAGCACATTAGGTATTTAGGTAGGGGGCGGTTATCACCCCTCTGTACTAGTTGTTAGGTTTAGATAGTTTAGTTAGTGTAGCTAGTTAGGGTCGTCCTACAAATACAAGTCAGGTAGTGGTTTACTCTTTTAGACTAGCTtagataggttttgttttgtttcagtgttagcCGACACCGCCCAGGGTGTTTTCCtctgtatatttgttcattatttgtatcattatcatcacgtgtttttgtatactgtacatacttgtacatactcccctccccattgtaaataaaccc

Function


GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46862 lncRNA upstream 7203 46555190 ~ 46565098 (+) False G37521
TU46863 lncRNA upstream 7203 46559162 ~ 46565098 (+) True G37521
TU46856 lncRNA upstream 21746 46548815 ~ 46550555 (+) True G37516
TU46850 lncRNA upstream 25952 46545171 ~ 46546349 (+) True G37514
TU46853 lncRNA upstream 25952 46545245 ~ 46546349 (+) False G37514
TU46910 lncRNA downstream 227318 46800116 ~ 46800414 (+) True G37567
TU46980 lncRNA downstream 592196 47164994 ~ 47165220 (+) True G37630
TU47006 lncRNA downstream 826928 47399726 ~ 47467840 (+) True G37655
TU47016 lncRNA downstream 1076863 47649661 ~ 47657993 (+) False AMCG00019820
TU47036 lncRNA downstream 1113572 47686370 ~ 47686811 (+) True G37678
AMCG00019804 mRNA upstream 1313342 45257308 ~ 45258959 (+) True AMCG00019804
AMCG00019803 mRNA upstream 1334900 45206216 ~ 45237401 (+) True AMCG00019803
AMCG00019796 mRNA upstream 1398383 45158209 ~ 45173918 (+) True AMCG00019796
AMCG00019798 mRNA upstream 1507013 45064638 ~ 45065288 (+) True AMCG00019798
AMCG00019797 mRNA upstream 1636692 44925531 ~ 44935609 (+) True AMCG00019797
AMCG00019812 mRNA downstream 91409 46664207 ~ 46771569 (+) True AMCG00019812
AMCG00019811 mRNA downstream 250448 46823246 ~ 46836213 (+) True AMCG00019811
AMCG00019814 mRNA downstream 268650 46841448 ~ 46844186 (+) True AMCG00019814
AMCG00019810 mRNA downstream 277121 46849919 ~ 46861698 (+) True AMCG00019810
AMCG00019817 mRNA downstream 496198 47068996 ~ 47069748 (+) True AMCG00019817
TU46693 other upstream 1232682 45279455 ~ 45339619 (+) False G37372
TU46357 other upstream 2515698 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 3238988 43330292 ~ 43333313 (+) True G36954
TU46165 other upstream 3301416 43261894 ~ 43270885 (+) False AMCG00019758
TU46131 other upstream 3609643 42960656 ~ 42962658 (+) True AMCG00019755
TU46904 other downstream 218229 46791027 ~ 46791485 (+) True G37561
TU47161 other downstream 1877830 48450628 ~ 48451167 (+) True G37779
TU47362 other downstream 2985684 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 2990096 49562894 ~ 49563214 (+) True G37964
TU47369 other downstream 2998389 49571187 ~ 49571486 (+) True G37968

Expression Profile